MmuEX0009442 @ mm9
Exon Skipping
Gene
ENSMUSG00000039648 | Ccbl1
Description
cysteine conjugate-beta lyase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30047445-30061367:-
Coord C1 exon
chr2:30061153-30061367
Coord A exon
chr2:30049574-30049632
Coord C2 exon
chr2:30047445-30047592
Length
59 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTCTCTGTACCCAGCTC
3' ss Score
9.22
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCAAATGCTTGGGGATCCTAGGCTGTCGCCCAGTCTTTAAAGGGCACACAGAGCTTCGCACTGCTTCTGACAGTTCTCTTGAGCTAAGCTGCATCTGGGCGGAAGTAGCCCATCTAGGGCTCGGCCTCTTTAAAGGAACAGACTTCTGCAACCTTGGGAATACGTTTGGGGTCGCGGGTTATTGGACAGAGCAGCGCTATTGTTTGCTGAAGCAG
Seq A exon
CTCACCATGTCCAAACAGCTGCAGGCTCGAAGGCTGGAAGGGATCGATCACAACCCCTG
Seq C2 exon
GGTGGAGTTTACCAGACTGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGTGCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648-'1-7,'1-5,4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACAGAGCAGCGCTATTG
R:
GTGGTAGCCTGCTGAAAAGCT
Band lengths:
145-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: