GgaEX6015131 @ galGal3
Exon Skipping
Gene
ENSGALG00000004604 | CCBL1
Description
NA
Coordinates
chr17:5917390-5920119:-
Coord C1 exon
chr17:5920005-5920119
Coord A exon
chr17:5918031-5918089
Coord C2 exon
chr17:5917390-5917543
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTCACTCTTTGCAGGCA
3' ss Score
11.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCTGTGCAGTGAGACAGCAGGAGCCGTGGCATGCTCAGGAGAGTGGGACCGTTTCTGCGTCACTTCTTACTGGAGAGGAATTGCAGCGCTGGATATAGCTCGTACTGCAGCGAG
Seq A exon
GCAAAAATGTCAAGGCCGGTGCAAGCCCGGAGGCTGGAGGGAGTAGATAAGAATATCTG
Seq C2 exon
GGTGGAGTTCGTAAAACTGGCTGCCACCTACTCCACGGTCAACCTGGGCCAGGGCTTCCCCGACTTCCCCCCACCAGAGTTTTTGAAGGAGGCGTTCAGCAGAGCGGTCAGCGGGGAGGAGGAGCACATGCTGCACCAGTACACCCGTGCCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004604-'3-3,'3-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF080487=RepA1_leader=WD(100=82.1)
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.6=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAATTGCAGCGCTGGATA
R:
CTGCTGAACGCCTCCTTCAAA
Band lengths:
142-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]