HsaEX0012836 @ hg38
Exon Skipping
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128842654-128882036:-
Coord C1 exon
chr9:128881897-128882036
Coord A exon
chr9:128845353-128845411
Coord C2 exon
chr9:128842654-128842801
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTCCACTTGTTCGTCTCCAGCTC
3' ss Score
8.67
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CCCGCTCTCGCCTCCGCGCTAGCGCCCTGCTGCTTCGGGGCGGAAGTAGCGGAGCCGGGCTCGGCCCCCTTAAAGGGACAGGGACTGCTGCAACCTACGGGGTGTACTTGGGAACGAGGGGTGAAGCGGCCCAGGTGAGG
Seq A exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
Seq C2 exon
GGTGGAGTTTGTGAAACTGGCCAGTGAGCATGACGTCGTGAACTTGGGCCAGGGCTTCCCGGATTTCCCACCACCAGACTTTGCCGTGGAAGCCTTTCAGCACGCTGTCAGTGGAGACTTCATGCTTAACCAGTACACCAAGACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097-'1-25,'1-19,10-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.072 C2=0.008
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGGGTGTACTTGGGAA
R:
TGAAAGGCTTCCACGGCAAAG
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development