HsaEX0012844 @ hg38
Exon Skipping
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128845353-128846859:-
Coord C1 exon
chr9:128846680-128846859
Coord A exon
chr9:128845605-128845750
Coord C2 exon
chr9:128845353-128845411
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTCTTTAACCCTCAGCCC
3' ss Score
8.32
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAGGTGGCTGAGAAGAATGTTGGATCCCCAGCTCCACGGCCCACCAGCCATCTGGGACTGGCAAACCCACAGGAACGGAAGGTTCCTCAGGGACCACAAAGCCCATGTGAGGTCCCTGCTGCTGAAGGGATTCTGAGGACAGGAGGAGCCAAATTACCTATCCAGGGTCACCCAGCCAAG
Seq A exon
CCCTTCCTGAGTCAGACTTTAACCTGGCCAAGTCAGGGCTCTGTCTCAGGACGCATGGAGCCAGGGCTGGAAGTCTCCACTGGGCAGGCGCCAGGCAGCCCCTGCAGGTTGGGGAGGTGGAGGCTGCTGGAGTCAAGAGGAACCAG
Seq C2 exon
CTCGCCATGGCCAAACAGCTGCAGGCCCGAAGGCTAGACGGGATCGACTACAACCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097_MULTIEX2-4/4=3-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.728 A=0.980 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000436267fB31178
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCTGAGAAGAATGTTGG
R:
GGGTTGTAGTCGATCCCGTCT
Band lengths:
235-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development