RnoALTA0021090-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000043426 | Kyat3
Description
kynurenine aminotransferase 3 [Source:RGD Symbol;Acc:1359262]
Coordinates
chr2:248649441-248661655:+
Coord C1 exon
chr2:248649441-248649539
Coord A exon
NA
Coord C2 exon
chr2:248661597-248661655
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCCGTAGGT
5' ss Score
5.02
3' ss Seq
ACATTCAATATATATTTCAGAAA
3' ss Score
6.69
Exon sequences
Seq C1 exon
ATGCTTTTGGCCCAGAGGAGACTCTTCTCCCTTGGCTGCAGAGCAAAGCCCATAAAGACAATTTACTCTTCGAAAGTTCTCAGACTCTCCACTTCTGCC
Seq A exon
NA
Seq C2 exon
AAAATGGCTTTGAGATTCAAAAATGCCAAACGAATCGAAGGCCTGGACCAAAACGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043426-3-2,3-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTTTGGCCCAGAGGAGA
R:
GTTTTGGTCCAGGCCTTCGAT
Band lengths:
153-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]