HsaALTD1022359-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88969409-88988351:-
Coord C1 exon
chr1:88988252-88988351
Coord A exon
chr1:88988248-88988251
Coord C2 exon
chr1:88969409-88969467
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTATTG
5' ss Score
5.64
3' ss Seq
TCAATATTTATATATTTCAGAAA
3' ss Score
7.94
Exon sequences
Seq C1 exon
CATGTTTTTGGCCCAGAGGAGCCTCTGCTCTCTTAGCGGTAGAGCAAAATTCCTGAAGACAATTTCTTCTTCCAAAATCCTCGGATTCTCTACTTCTGCT
Seq A exon
GTAG
Seq C2 exon
AAAATGTCACTGAAATTCACAAATGCAAAACGGATTGAAGGACTTGATAGTAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-3-7,4-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGTAGAGCAAAATTCCTGA
R:
TCCTTCAATCCGTTTTGCATTTGT
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains