BtaEX0007296 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55098053-55118102:+
Coord C1 exon
chr3:55098053-55098152
Coord A exon
chr3:55111653-55111811
Coord C2 exon
chr3:55118044-55118102
Length
159 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTTTTTTTTTTTAGATT
3' ss Score
11.47
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CATGTTTTTGGCCTGGGAGAGACTCTGCACCCTTAGCTGTAGACCTAAATTCCTGAAGACAGTTTGGGCTTCAAAAATCCTTGGACTCTCTACTTCTGCT
Seq A exon
ATTCCACATATAGATGGGGTATTTGTCTTTCTCGGTCTGATCCCATGGACTGTACCCTCTGTCTGTGAAGTTTTCCAGGCTAGAATACTGAAAGGAATTGCCATTCCCTTCTCCAGGGGATCTTCCTGATCCAGGGATCGAACCCATATCTCCTGCCTG
Seq C2 exon
AAAATGTCTTTGAGATTCAAAAATGCAAAACGAATTGAAGGCCTTGATAGCAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505_MULTIEX1-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000000643fB1395
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTTTTGGCCTGGGAGAGA
R:
ATTGCTATCAAGGCCTTCAATTCG
Band lengths:
154-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development