BtaEX0007950 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5105577-5115261:-
Coord C1 exon
chr16:5115073-5115261
Coord A exon
chr16:5110816-5110866
Coord C2 exon
chr16:5105577-5106706
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATAAAATTTTTCTTCTACAGAAA
3' ss Score
8.99
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
AAATTTTATGTCCAGAACCACCAAAAGTTGACCATGGAATGATTCAAGAGAAACAAAACAGTTATGCATATGGACAATCTGTAACATATAAATGTATGGAAGGCTTCACCCTACATGGAGAGAGCTCTATCTATTGTACTGTAAAAGATGACCAAGGAGAGTGGAGTGGCCCCCTACCTCAGTGTAGAG
Seq A exon
AAACTGATGTCACACCAACAGTTCCAAAATCCACTGAAGTAAATGTTCCAG
Seq C2 exon
TTGCTAGCACCGTTGCATCGGGTAAGTGTGACTCTCTGAGAGTTCACAGAATTTGTCATCGCATTCGGATATATAATTCCTGGAAAAGAATATTGTTTTTTTACTGTCTTTGTTGTTGCTGTTCAGTCACTAAGTCGTGACCAACTCTTTGTGATCCCATGGACTGTAGCATGTCAAGCTCCTCTGTCCTCCACTATCTCCCAGAGTTTGGTCAAATTCATGTCCACTGAGTTGGTGATACTGTCTTAGGGATACTATCAGAATACAGTATGTGTGGGTGCCAAAGAGAAAAGAGGTAAAGGCATCTTATCGACATGTTTGTGGGCACCATTAGGTACTCAGTATGTTAGAGTACTCACTATGTTAAGAACATTTCCCACCATGTTCTTGTTCCAGGGTAATTTTAGGAGAACTTCAAGTCATTTGGCCAATCAATCAAGTATTATTGCATGCCTAGTGGCTCACTGCATCTCATTTTAGTGCCTAAGAATCACAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984_MULTIEX1-2/6=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.875 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGCTTCACCCTACATGG
R:
CTCAGAGAGTCACACTTACCCGA
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development