MmuEX7000398 @ mm10
Exon Skipping
Gene
ENSMUSG00000026399 | Cd55
Description
CD55 molecule, decay accelerating factor for complement [Source:MGI Symbol;Acc:MGI:104850]
Coordinates
chr1:130448328-130452575:-
Coord C1 exon
chr1:130452384-130452575
Coord A exon
chr1:130449417-130449563
Coord C2 exon
chr1:130448328-130448408
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTACATTGTTTTCTTTATAGAGA
3' ss Score
8.06
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AAATACATTGTCCAGAGCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGTGACTCTTATACGTATAGCCAGGTGGTCACCTATTCATGTGACAAAGGCTTCATCCTGGTTGGAAATGCTAGCATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAG
Seq A exon
AGAAATCCAAGGTCCCAACGAAGAAACCAACAATTAATGTTCCAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTTCAG
Seq C2 exon
CAACCCAGCATGTACCTGTTACCAAGACAACAGTACGTCATCCAATAAGAACATCTACAGACAAAGGAGAGCCTAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026399-'9-16,'9-13,10-16=AN
Average complexity
A_S
Mappability confidence:
89%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=0.990 C2=1.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGAGCCACCAAAAATCA
R:
AGGCTCTCCTTTGTCTGTAGATGT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types