BtaEX0007951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5105577-5110866:-
Coord C1 exon
chr16:5110816-5110866
Coord A exon
chr16:5110207-5110290
Coord C2 exon
chr16:5105577-5106706
Length
84 bp
Sequences
Splice sites
3' ss Seq
GACCTCTGCTCGTGTTACAGCAG
3' ss Score
7.18
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AAACTGATGTCACACCAACAGTTCCAAAATCCACTGAAGTAAATGTTCCAG
Seq A exon
CAGCAAAAAGTACAGCTGTTCCCAGGACAACCCCACGTTTTCATGCAACAGGCACACCTCAAGGAAGAGGAAGCGCTCCTTCAG
Seq C2 exon
TTGCTAGCACCGTTGCATCGGGTAAGTGTGACTCTCTGAGAGTTCACAGAATTTGTCATCGCATTCGGATATATAATTCCTGGAAAAGAATATTGTTTTTTTACTGTCTTTGTTGTTGCTGTTCAGTCACTAAGTCGTGACCAACTCTTTGTGATCCCATGGACTGTAGCATGTCAAGCTCCTCTGTCCTCCACTATCTCCCAGAGTTTGGTCAAATTCATGTCCACTGAGTTGGTGATACTGTCTTAGGGATACTATCAGAATACAGTATGTGTGGGTGCCAAAGAGAAAAGAGGTAAAGGCATCTTATCGACATGTTTGTGGGCACCATTAGGTACTCAGTATGTTAGAGTACTCACTATGTTAAGAACATTTCCCACCATGTTCTTGTTCCAGGGTAATTTTAGGAGAACTTCAAGTCATTTGGCCAATCAATCAAGTATTATTGCATGCCTAGTGGCTCACTGCATCTCATTTTAGTGCCTAAGAATCACAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984_MULTIEX1-3/6=2-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.917 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCACACCAACAGTTCCA
R:
AGTGACTGAACAGCAACAACA
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development