MmuEX1006219 @ mm10
Exon Skipping
Gene
ENSMUSG00000026399 | Cd55
Description
CD55 molecule, decay accelerating factor for complement [Source:MGI Symbol;Acc:MGI:104850]
Coordinates
chr1:130447619-130449563:-
Coord C1 exon
chr1:130449417-130449563
Coord A exon
chr1:130448328-130448408
Coord C2 exon
chr1:130447619-130447639
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGCTCATATTACAGCAA
3' ss Score
6.06
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGAAATCCAAGGTCCCAACGAAGAAACCAACAATTAATGTTCCAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTTCAG
Seq A exon
CAACCCAGCATGTACCTGTTACCAAGACAACAGTACGTCATCCAATAAGAACATCTACAGACAAAGGAGAGCCTAACACAG
Seq C2 exon
GTGGTGACCGTTATATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026399_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=1.000 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types