BtaEX0007954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5098369-5106706:-
Coord C1 exon
chr16:5106686-5106706
Coord A exon
chr16:5101175-5101247
Coord C2 exon
chr16:5098369-5099163
Length
73 bp
Sequences
Splice sites
3' ss Seq
ACCATTTTTTCCCCCTCAAGGAT
3' ss Score
8.59
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
TTGCTAGCACCGTTGCATCGG
Seq A exon
GATGTGTTGCCGTTACTGTAATAATTGGTATCATAATTCTAGTCAAAATTTTCTGGGACGGTGGAAAATCAGG
Seq C2 exon
CTCTTACTACACACATGAGAACACCACAGCACTTAAGTTTCATGATTCACTGTAACTGGTGATGCTGCAGAAGTAAGACCTCTGGTAATTTACAAAAGGTATATGGTTCAGTAAAATTACATTTCTGTGTCTTGGAAAATGTCCATTAACACAACTGGCTTGGTATCTATCTGTGACTATTAAAGGACAATAGAGGTTTAAACCTCTATTATTGTTAGAATTGTTTTTCTTTGTTGAATGATTGACTAACACATTGATCTTTGTTAATGTGACATGTCTTCAGCCTTCCACTCTTCAGCAATTTACCTATTATCTCATTCTGTGTTTTTTACTCAGTTGATTGAAATGTTTGGATGTTCACAATCCTGCAAATAATCTGGAAAAAGCAAAAGATTGATACATTAGGGCTTACAAATGGGAATGTTTTCATTGTGACTACGTGCGTCATGAGATGGTTGGCTCATACTGTATTTGTTTCTCCCATTTGTAATATTTAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984_MULTIEX1-6/6=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development