BtaEX0007953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5101175-5110866:-
Coord C1 exon
chr16:5110207-5110866
Coord A exon
chr16:5106686-5106706
Coord C2 exon
chr16:5101175-5101247
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTCCTTCTTTAGTTG
3' ss Score
9.63
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AACCCCACCAACTCCTCAGAAACCCACCACTGTAAATGTTCCAGCTACAGAAACCCCACCAACTCCTGAGAAATTCATCACAATAAATTCTTCAGCTACAAAGCCCCCACTAGTTTCTCAGACATACACCACTGTAAATGTTCCAGCTACAAAGGTCCCATCACCTCCTCAGAAACCTTCCACAGCAAATGGTTCTGCCACAACAGCCTGGAATTCCCCAATATCAAACACTGTCTCTACAGCAGCTCAGAATCTCCTCATGGCAAATGATTCTGCAACCACACCAACAACCCAAAGATTCACCCCAGCAAAATCTTTACTTATACAGAATCTTAAAACTACACCAAAGTCCACTTCTGTACATACGACTAAGGGTCTCCATATAACACAAAGATTGACCTCTGCTCGTGTTACAGCAGCAAAAAGTACAGCTGTTCCCAGGACAACCCCACGTTTTCATGCAACAGGCACACCTCAAGGAAGAGGAAGCGCTCCTTCAG
Seq A exon
TTGCTAGCACCGTTGCATCGG
Seq C2 exon
GATGTGTTGCCGTTACTGTAATAATTGGTATCATAATTCTAGTCAAAATTTTCTGGGACGGTGGAAAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984_MULTIEX1-5/6=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSBTAT00000009178fB1525
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGCACACCTCAAGGAA
R:
CCTGATTTTCCACCGTCCCAG
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development