BtaINT0034606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006984 | CD55
Description
Bos taurus CD55 molecule, decay accelerating factor for complement (Cromer blood group) (CD55), mRNA. [Source:RefSeq mRNA;Acc:NM_001030303]
Coordinates
chr16:5105577-5110866:-
Coord C1 exon
chr16:5110207-5110866
Coord A exon
chr16:5106707-5110206
Coord C2 exon
chr16:5105577-5106706
Length
3500 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCCTTTTTTCCTTCTTTAGTTG
3' ss Score
9.63
Exon sequences
Seq C1 exon
AAACTGATGTCACACCAACAGTTCCAAAATCCACTGAAGTAAATGTTCCAGGTACCAAAGTCCTATCAACTCCTCAGAAACCCACCACAGTGAATGTTTCAGCTACAGAAACCCCACCAACTCCTCAGAAACCCACTACTGTCAATGTTTCCGCTACAGAAACCCCACCAACTCCTCAGAAACCCACCACTGTAAATGTTCCAGCTACAGAAACCCCACCAACTCCTGAGAAATTCATCACAATAAATTCTTCAGCTACAAAGCCCCCACTAGTTTCTCAGACATACACCACTGTAAATGTTCCAGCTACAAAGGTCCCATCACCTCCTCAGAAACCTTCCACAGCAAATGGTTCTGCCACAACAGCCTGGAATTCCCCAATATCAAACACTGTCTCTACAGCAGCTCAGAATCTCCTCATGGCAAATGATTCTGCAACCACACCAACAACCCAAAGATTCACCCCAGCAAAATCTTTACTTATACAGAATCTTAAAACTACACCAAAGTCCACTTCTGTACATACGACTAAGGGTCTCCATATAACACAAAGATTGACCTCTGCTCGTGTTACAGCAGCAAAAAGTACAGCTGTTCCCAGGACAACCCCACGTTTTCATGCAACAGGCACACCTCAAGGAAGAGGAAGCGCTCCTTCAG
Seq A exon
GTCAGTTGACTCAGTCCAGGTTTCCACATATGGATTTTATGTGCCATGGTAGAAATTTCAAATTCATCAGGGTTAAAAAATTAAGTAGTCTCTGGTTTATTGTAGGCAGAGTTTCTTCATAGCAATGTTCTGACTTTCTTCAGAGGCTAACTTTGGATTGTGCTAGAGCATACCTTTAAGAAAGAAATATTTTTGCAATGATATAGAAAAAGGTTGTGGTGTCATAAAAGCAATTCTAAATTAACGTCAGTAAAAAAATGCTGCTTTTCTTGTTAGCTTTAGGGAGCCACTGAATTCCTCATGATCCCTCAAAGAACCAAGTGTGTATAATCCTTTAGGTTGATTTCTAGGTCTGATTCAATGACAGAGACTCATCCCTCAAGCATGCTAAAGGACCTCTCCAGATTCCCTAGAGTTGCTGATTTGGTTAAGTACCTTAATAGTGTCTTCTAAGTAATTAAAAACACAGAGTTCTTTGAAAGCTTTCAGGTTAACTCTTTAAATGACTTTTCATAGTTTTTATGAAAGCAGAGTAACATAAGCTTTAGATTTCAGGAAAACCTACTGAGTGAATGAAACCCATCTAATTAATGCTTTTTCAGACTACCAGGATGTCTTCTTATTTTACGACTTGCTTAATGAATAGTCATTTTTATAGACACTCTTGTTCTTTAATAGAGATATGTGGATTTTTGGTTGTTTTTATCCGTTTGTTTTTATCTTTTTTTAAAATCTCAATACGACTAAGCCAAGAGGTAATTTTTTAAATTATTTTAACTTTTCATTGACATCAACACACAGAAAATTGTACAAAATATACATATAAGGCTTAATAACTTTTCTAAAGCAAATATCAGTGAACTACCACATATGTCAAGAAATAGAGCAGCATCAGCCGCTCACCTTCCCGATGCTCTGTGATTCTGAACTCTGTTCCCTGACTTCTCCAGCCAGTGAAACTGTGGCTTTCTGCTCTCTGTGCCAAGTGGCCTAGGGATTTCTCCCTGCTGTGCGCAGGCAAATCGCACTCCCTGCAGCTCATCTGCTGCCTGAGCTCTCTCAGCTTTGATTTATTTCTGCCTGAGTTAGTTTGTTCTTCCATGTCTTCAAATAGTTATCATTGTTGTTTTTTCAGTACATTGTACAAATTTCATAAATTTCCATGCTCAAGCTCATTTGGCCATTACCCAGAATCTTTAAGAACTTAAAACATTACAGATATTATTGTGGAAATTTCCTTTGTATGTTTCTTTATTCCTTTAGGTAAAAGGTCAAATACATAAAATCTCACTCCAATTAGTTCCCTTTTAAAAAAAGGGAACCTCAATTCCTGCCTGCTTTTTTTTTCCTGCTTATTTAAAAAAATTTTATCAAAGTATTATTGATTTACAATGTTGTATTCATTTCTTTCATACAGCAAAGTGACTCAGCTTATATCTATAAATCCCAACCTTCTAATTTATCTCTCCCTCCAACCTTTTCCCATTGGTAACCATAAATTTTGTGTTCTGAGTCTGTGAGTCTGTTTTTGTTTTGTAACTAAATTCATTTGTATCATTTTTTTCTTTTTAGATTTCATAATACATGATATCACATGATGTTTGTCTTTGTCTGACTTACTTCACTCAGTGTGACAATCTATGTTGCTGCACATGGCATTGTTTCATTCTTTCTATGGCTGAGTGATACTCCATTGTATATATGTACTGCATCTTCCTTACCCATTTCTCTGTTGATGGACATTTAGGCTGCCTCCGTGTCTTGTCTATTGTGAACAGTGCTGCAGTGAACATTGGGGTGCATATATCTTTTCATATTAGAATTTTTGTCTTTTCTGGATCTATATTCAAGAGTATTAGATCATGTGGCAACTGGACTATCTTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCTGGTTTGATTCCTGGGTCGGGAAGATCCCCTGGAGAAGGGCTAGGCTACCTACTCCAGTATTCTTGGGCTTCCCTGGTGGTTCAGGTGGTAAAGAATCTGCCTACAGTGCAGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATTACTTGGAGAAGGGCATGGCAACCCGTGCCAGTAATCTTGTCTGGAGAGTCCCCGTGGACAGAGCAGCCTGGTGGGAGTCCATGGGTTCGCAAAGAGTGGGGCACGACTGACTGACTAAGCACACACACACACAGCAACACTAAGTTTTTTAAGGACTCTCCATACTGTTCTCCATAGTGGGTGTACCAGTTTACATTCCCACCAACAGTATAGAATGGTTCCCTTTTCTCTACGTCCTCTCCAGCATTTATTGTATGTAAACTTTTTGATCTTGGCCATTCTGACCGATGTGAGATGGTATCTCATTGTGCAAGCTCCCTCTCTGTGTTTTTATTCTTATGCTACACGTATGTCACCATAAGTAGTACATATTATAGCTTTGCATGTTTTTTTTTTATAATTTGCGTAAACAGTATGTCATATGTTTCATTACCTAACTTGACTTTTTGCACTCAACATTGCTTTGTGGCTTATATTGATCCAATTAGATTCAGTTAATTAATCTTAACATTTATATGTGGTTACTGACTTCTTAAAATTTTACAACATCTCTGGCCCTAAAAATTTTAGGTTGAATATATAGGTTTAATAGGGCAAGGTGAAGAGAAACAAGTTCACTTAGTATAAATTTGTTATACAGCTAACTGTGTTGAAATACTTTTTTCTTCATGAATATGATAATTTAACAAATTTAACAAACTTTTCAATTATTTTAAATTGATAAATTATGATAAAAATACAGTGAATATTTGGGATCAAATTTCTCTCTTATATACAATTAATTTATCCTTTAAATATTGTATGCCTTTTCTGCTTTTATTGAAAAAATAGTAGTAGCTACTACTGAGTGTAATCCATAGTGCATGTACCATGCACCTTCCATTTGTCATTGTTAGTCCTTACAGTAACCTTGACTTGCCATAAAGTCATATAACCAAATTTACATAGTATTTGTTTCACTATTCAATAACCCTTTAATCACATTTTATGTTTCTATTGTTGACTGACTTTGTTTAATAGAAAAAAAAGAAAGAAAGTGAACAGTCATGTCCAACTCTTTGCGACACCATGGACTGTAGCCTACCAGGATCCTCAGTCCATGGGATTTTGCAGGCAAGAGTACTGGAGGGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATTGCACCTGGGTCTCCTGCATTGTAGGCAGACACTTTACCATCTGAGCTACCAGGGAAGCCCTTGTTTAATAGAGAGAGATACTAATGTGTGTTACTTGATTGTTAGTAATATGATTGCTTTCATTAATTTATTTATAATTGTTTCTTTTTAAGTACAGTTGATTGATAAACTTATATATTTATTAAATTGCTAGCAAATCAATGACTTTAAAACAGTTTTACTTTTGTAATTCTTTCCTTTTTTCCTTCTTTAG
Seq C2 exon
TTGCTAGCACCGTTGCATCGGGTAAGTGTGACTCTCTGAGAGTTCACAGAATTTGTCATCGCATTCGGATATATAATTCCTGGAAAAGAATATTGTTTTTTTACTGTCTTTGTTGTTGCTGTTCAGTCACTAAGTCGTGACCAACTCTTTGTGATCCCATGGACTGTAGCATGTCAAGCTCCTCTGTCCTCCACTATCTCCCAGAGTTTGGTCAAATTCATGTCCACTGAGTTGGTGATACTGTCTTAGGGATACTATCAGAATACAGTATGTGTGGGTGCCAAAGAGAAAAGAGGTAAAGGCATCTTATCGACATGTTTGTGGGCACCATTAGGTACTCAGTATGTTAGAGTACTCACTATGTTAAGAACATTTCCCACCATGTTCTTGTTCCAGGGTAATTTTAGGAGAACTTCAAGTCATTTGGCCAATCAATCAAGTATTATTGCATGCCTAGTGGCTCACTGCATCTCATTTTAGTGCCTAAGAATCACAAGAGGAGAGAGTTATCAATACAGTTGCTATCTTCAAGTGTTTTATAATTAAATGTAAACTACTCATTGACTATTTCTAGATTTGTCCTGTCCCAAGTAAAACAAAGAATGTTACTTTTGGCTATATCTTCTTCCTTTTCCCTTCCCTGTCAGTGGTTTAAAGTAAAGTTTCTCCAGAAAATGCTCTGTTGCTGTAGGCATGAGACCAAAAACATACCTGTTGCAGTTTCTTCTATCATTTGGTCCAGTCCTTTTTTGTTTGTAAATATATCATCTGATGTTATGTATTAACAAGAATAATAAGATGGTAAGAGAAATGTCTGTTAAGAAGTTATACAGCTAAATTGGCATATTGATAAGTAATGTCTAATGGAAAATACACATAAAAATTTGTAAAAAACACTTTGATTTATGTGTTTATAAGCTGAAAGCTCATCTTATGCATGCATGAATTAGCCATGTGACTATGAAACTGAAAGTAATACTTGCTTTTATTATTTTCATTGTTACTTATTATAGTTTTTGTGTTTTAGGCAAAACTTTTTTAAGCTAAAAGATTTATTTTGAAAGATTCCAACAGTTGCAATTCATTTTGTCCATTCTATATTTTAAATAAAAATAAATGTATTCTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006984:ENSBTAT00000009178:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development