HsaINT0031210 @ hg38
Intron Retention
Gene
ENSG00000196352 | CD55
Description
CD55 molecule (Cromer blood group) [Source:HGNC Symbol;Acc:HGNC:2665]
Coordinates
chr1:207337329-207339417:+
Coord C1 exon
chr1:207337329-207337409
Coord A exon
chr1:207337410-207339396
Coord C2 exon
chr1:207339397-207339417
Length
1987 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTTTCCCCTTCGTCTGTAGGTA
3' ss Score
12.12
Exon sequences
Seq C1 exon
CAACACGGAGTACACCTGTTTCCAGGACAACCAAGCATTTTCATGAAACAACCCCAAATAAAGGAAGTGGAACCACTTCAG
Seq A exon
GTCAGTTGACACTGTTCAGGTTTACTGAGTATGGATCTAATGTGCTATGGTGGAAATATGAACTTGACCAAGATTGCAGGATTAAATGGTCTCTAATTTATTGTAGCCAGGGTTTTTCATACTAATACTTTTTACTTTATTTGGAAGCGGACTTGGATTGTACTAGGGCAAATCTTTAAAAAAAGAAACATTTACAATAATAGAGAAAAAGACTGTGGCCCCATTAAAAAAATGCTAAATTAAGATTGGTAAAAAAAAAAAAATTCTGTTTCCTGTAGTAGTTTTAGGGAGTCAACGAATTATTCAAGACCCCTTCAAAGAACCAAATATGTACTGTCTTTAAGGCTGAGTCCTGGGTCTGGTTCATTGATAGAGATCCATCCCTCAAAGTATGCTAAGGAATCTTCCCGGATTCCCTAGAGTTGCAGATCTGCTAAAGCATCTCAATAGTGTCGTCTAAGTAATTGAAAATACAGAGATCCTTTCAAATAGTTCGTATTATTACAAGGCTCTATAAACGATAGGTTCTCAGTGGCACCAAGTAATTGTGTTTTATCTATAGTTTTACCCATTATGACCGTATTTTCAAAATGATTTTATATATTTCATAATTGTTACCTTGAAGCCTATTTTGCCAGCACCTGGATATTTTTAAGAATTTAAACATTATGGATGTTATCGTTAAAGTTCCCTTAAAACATTTCCCCAGCCCATTTTTCTCCCTCTAAGGCAATTACTGCCCTGAAACTGATGTGCTTACTTCCTGTCTGTTTTCATTCTTATACTCCATGTTTCCATAAGTAGTACATAATAATGTTTCATATTTTTAAAATAATTTACAGAAACTGTGTATGTTTCATTACCTCTTAGCACTCAGCATTGGTTTTGTGGCTTACATTGATTAATTTAGATTTACTATACTAATTTTAATTCTTTATGTGGTTTTTTTACTTCTTTACAATTTTATGACTTCTCTTGGTCTAAAATTTCTAGGTTGAACACGTCCAGTTTTTAATAGGGCAAGGCAAAGAGAAATAAGCATCACTTATAAATTTGTTATAGAACTAACTTTATTGACATATTTCCTTCTGTAAAAAGTATAAGATAATTTAAGACATTTAAACTGAACCTGATGAGTCAATTATAATATATCAATATTTGGGATCAAATTTTACTCTTAGGTACAATTAATTTACTCTTTCAGGGCACAATATAAAAAAATTGTAGCCACCACTTACTGAGTATATACTATAGTGATATGTTCCGTTCACCTTCTGTTTGATGCCACTCGTCTGTACCACAACCTTGCAAAGTATCTTCAGATTGATTTTATAGATGAGGAATTAGAGGCTTAGAGATTAATTCATCCAGTTCATATCCAGTGCACAGTTTAATCCTGCACTTTTTCTGCTGAGTAATATTGCTTGTTCTAAATGGCACTCTTGAGTCAATGTGTTCACCTCGCTTAGGAGAGCAGCTTATTTATTGTTATAAATATGCTTATCTGAAAGTAAATTTATTTTTGCAATGCCCCATCCGTAGTCATTGAAAGATATAAATAATAAGGTGATATGGCATTTTTGAGTTTTGATATAGTCTGCTAAAAGGGACTTAGTCGTCTTATAGTTTCTTGTTAGTAGGATTGGATCAGCAATTATTTACTGTTTAAGTTTTCAAACATGTTTCTTGCCCTCAAGTCCTATAACCAAATTTAAATGGCATTTGTTTTGGTAATCAATAACTCTTTATCATAATTTATATTTACAGTGTTGATTCTGTTGAACAGGTATAGACAGTAATGTTTACATTCTACTTGATTAAGTTAATGTGTAATTGTTTTTATAAATTTATAATTATTTCATTTGTGGAAATTTGAGTTGCTTTCGAGTTTTCTAGTGTAGTTTATTGATAGTATATGAAATTGCTAGCAAATCAATGACTTTAACAAATTTTTGTTGTTAATCCTTTTTTTCCCCTTCGTCTGTAG
Seq C2 exon
GTACTACCCGTCTTCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352:ENST00000367064:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development