RnoINT0032253 @ rn6
Intron Retention
Gene
ENSRNOG00000003927 | Cd55
Description
CD55 molecule [Source:RGD Symbol;Acc:620651]
Coordinates
chr13:47136665-47137872:-
Coord C1 exon
chr13:47137792-47137872
Coord A exon
chr13:47136686-47137791
Coord C2 exon
chr13:47136665-47136685
Length
1106 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCCCTTTTTATTTTTTTTAGGTG
3' ss Score
12.05
Exon sequences
Seq C1 exon
CAACACAGCATGTACCTGTTTCCAAGACAACGGTACGTCATCCAACGAGAACATCTAAAGACAGAGGAGAGTCTAATTCAG
Seq A exon
GTCAGTGGATTTTGTCCAATGTGATGATGGAAACGTAACTTAAGGGGGCGGGTTATGTTCTGTGGAGGCATGGGAAAGGGGGTGCCTTAGCGGCTAAGGCTGAGACATCCCTTCCCACTGAGGGACCAGCCACATGACAATATAGTATAGAATAGAGTTTATTTAGGGCATGGGGAGGGGCATTAAGAGGGTAGTAGGGTGGAGAAGGGTGGGGGGGGCGTAGAGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAATTGAAGAGTAGAGGCCGACCATGGGCACATGGAGAGAAGGGGGGAAGGGAATGGAGAGGGAAGAGGATAAAATCAAGAGGGAAAGAGGAAGCAATAGAACAAGAGAGAACAAGAGAGCAAGAGAGAGAGGAGGAGGCGGGGAATCAGCCCCTTTTACTGTGTCAGGCATACCTGGCTGTTGCCAGGGAACCGTGGGGGTGTAGCTGACAGGACCCAATAGTCTCCGGCTGTGCCATAAATCTGCTCTGAGTCCCACTGCACAATAAGACAAAGATGTTGATAGTCTGAGTTTCGTTAGAATCGGTGGGAAGGGACTTCCGTTTTCGATAGCTTTTGTTTTGGGCTTTTTAACTTGTTTTTGAGATAAATCATTATTAGCCCAGGCAGGTCTTGAACTCTTGACACCCAGTTTTCCCAGTGCTAGGATTACAGGCCTGTGCCTCCATACTTGGTTTCATAGTTTTCGATCATAGATTATATTGTCATTTGTTTTCTATTTAAGCTTCTAAAACTTGTCTCTTGACTTCAAGTTGTCTCACTAAGTGCATGTAATATTTGGGTTGGTGTTTTAGATCTGTCATGGCTCATGTTGACATTAGTAACTCTATTCATCAGATATTAGTGTTGATGCTGCCAAAGGAAAAATATATGATTGTGTTCAAATATATATATATGAATATATACTTACGAATGTTTGAGTTGGTTTTGAGGTCTTACGTATAGCTGATCAATCTACACATATATATTAAGTTAGCAAATTAATTGAAAGTTAAAATGTTGAGTTTTATAATTCTTTTTTCCCTTTTTATTTTTTTTAG
Seq C2 exon
GTGGTGACCATTTTATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003927:ENSRNOT00000005284:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]