HsaINT0031210 @ hg19
Intron Retention
Gene
ENSG00000196352 | CD55
Description
CD55 molecule, decay accelerating factor for complement (Cromer blood group) [Source:HGNC Symbol;Acc:2665]
Coordinates
chr1:207510674-207512762:+
Coord C1 exon
chr1:207510674-207510754
Coord A exon
chr1:207510755-207512741
Coord C2 exon
chr1:207512742-207512762
Length
1987 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTTTCCCCTTCGTCTGTAGGTA
3' ss Score
12.12
Exon sequences
Seq C1 exon
CAACACGGAGTACACCTGTTTCCAGGACAACCAAGCATTTTCATGAAACAACCCCAAATAAAGGAAGTGGAACCACTTCAG
Seq A exon
GTCAGTTGACACTGTTCAGGTTTACTGAGTATGGATCTAATGTGCTATGGTGGAAATATGAACTTGACCAAGATTGCAGGATTAAATGGTCTCTAATTTATTGTAGCCAGGGTTTTTCATACTAATACTTTTTACTTTATTTGGAAGCGGACTTGGATTGTACTAGGGCAAATCTTTAAAAAAAGAAACATTTACAATAATAGAGAAAAAGACTGTGGCCCCATTAAAAAAATGCTAAATTAAGATTGGTAAAAAAAAAAAAATTCTGTTTCCTGTAGTAGTTTTAGGGAGTCAACGAATTATTCAAGACCCCTTCAAAGAACCAAATATGTACTGTCTTTAAGGCTGAGTCCTGGGTCTGGTTCATTGATAGAGATCCATCCCTCAAAGTATGCTAAGGAATCTTCCCGGATTCCCTAGAGTTGCAGATCTGCTAAAGCATCTCAATAGTGTCGTCTAAGTAATTGAAAATACAGAGATCCTTTCAAATAGTTCGTATTATTACAAGGCTCTATAAACGATAGGTTCTCAGTGGCACCAAGTAATTGTGTTTTATCTATAGTTTTACCCATTATGACCGTATTTTCAAAATGATTTTATATATTTCATAATTGTTACCTTGAAGCCTATTTTGCCAGCACCTGGATATTTTTAAGAATTTAAACATTATGGATGTTATCGTTAAAGTTCCCTTAAAACATTTCCCCAGCCCATTTTTCTCCCTCTAAGGCAATTACTGCCCTGAAACTGATGTGCTTACTTCCTGTCTGTTTTCATTCTTATACTCCATGTTTCCATAAGTAGTACATAATAATGTTTCATATTTTTAAAATAATTTACAGAAACTGTGTATGTTTCATTACCTCTTAGCACTCAGCATTGGTTTTGTGGCTTACATTGATTAATTTAGATTTACTATACTAATTTTAATTCTTTATGTGGTTTTTTTACTTCTTTACAATTTTATGACTTCTCTTGGTCTAAAATTTCTAGGTTGAACACGTCCAGTTTTTAATAGGGCAAGGCAAAGAGAAATAAGCATCACTTATAAATTTGTTATAGAACTAACTTTATTGACATATTTCCTTCTGTAAAAAGTATAAGATAATTTAAGACATTTAAACTGAACCTGATGAGTCAATTATAATATATCAATATTTGGGATCAAATTTTACTCTTAGGTACAATTAATTTACTCTTTCAGGGCACAATATAAAAAAATTGTAGCCACCACTTACTGAGTATATACTATAGTGATATGTTCCGTTCACCTTCTGTTTGATGCCACTCGTCTGTACCACAACCTTGCAAAGTATCTTCAGATTGATTTTATAGATGAGGAATTAGAGGCTTAGAGATTAATTCATCCAGTTCATATCCAGTGCACAGTTTAATCCTGCACTTTTTCTGCTGAGTAATATTGCTTGTTCTAAATGGCACTCTTGAGTCAATGTGTTCACCTCGCTTAGGAGAGCAGCTTATTTATTGTTATAAATATGCTTATCTGAAAGTAAATTTATTTTTGCAATGCCCCATCCGTAGTCATTGAAAGATATAAATAATAAGGTGATATGGCATTTTTGAGTTTTGATATAGTCTGCTAAAAGGGACTTAGTCGTCTTATAGTTTCTTGTTAGTAGGATTGGATCAGCAATTATTTACTGTTTAAGTTTTCAAACATGTTTCTTGCCCTCAAGTCCTATAACCAAATTTAAATGGCATTTGTTTTGGTAATCAATAACTCTTTATCATAATTTATATTTACAGTGTTGATTCTGTTGAACAGGTATAGACAGTAATGTTTACATTCTACTTGATTAAGTTAATGTGTAATTGTTTTTATAAATTTATAATTATTTCATTTGTGGAAATTTGAGTTGCTTTCGAGTTTTCTAGTGTAGTTTATTGATAGTATATGAAATTGCTAGCAAATCAATGACTTTAACAAATTTTTGTTGTTAATCCTTTTTTTCCCCTTCGTCTGTAG
Seq C2 exon
GTACTACCCGTCTTCTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352-CD55:NM_001114752:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)