RnoEX0018712 @ rn6
Exon Skipping
Gene
ENSRNOG00000003927 | Cd55
Description
CD55 molecule [Source:RGD Symbol;Acc:620651]
Coordinates
chr13:47126741-47137872:-
Coord C1 exon
chr13:47137792-47137872
Coord A exon
chr13:47136665-47136685
Coord C2 exon
chr13:47126741-47127913
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTTTATTTTTTTTAGGTG
3' ss Score
12.05
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CAACACAGCATGTACCTGTTTCCAAGACAACGGTACGTCATCCAACGAGAACATCTAAAGACAGAGGAGAGTCTAATTCAG
Seq A exon
GTGGTGACCATTTTATATATG
Seq C2 exon
GACATACATGTTTAATAACCATGACAATTTTGCATGTGATGCTCTTACTCACTGGCTAGTTGACGTAGCCAACGAAGAGTTAAGAAGAAAGTATATACAACCACTGAGAATACTTCTAGTTTGTTAGAATGTCCAGGAAGAATGGATACAATAAATTTAATAGTGTTGTTGGTTCTGTATGCTGTCATCGTCTTGAAGGTGTGCTAGAAATGATAACAAAGCAAGAAGAAAGGAGGTTGTCTGGAATGGTCTTTTCAATGCATATAAGTCTCTTGAAAATATTTCAAAACTAGACAAATTCACAATGTTGTGTAGTATCTTTTCTAAAAAAAAGTGTGGGAAAGTGTAGAAAATTTTCAGGGGAGAGGGAAATCATGATTTCTTAGGCTAGATCTATCCTGTTATTCTAGCTTACAATAAAAAATAGGAAGCTAAAAATACTGATGAGATTGCAAAAGTAAAAGACCCCAAACGAAATTTCCTTCCTTGTAAACCGAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003927-'14-18,'14-16,15-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATCCAACGAGAACATCT
R:
TGGCTACGTCAACTAGCCAGT
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]