BtaEX0007959 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37932585-37935675:+
Coord C1 exon
chr29:37932585-37932680
Coord A exon
chr29:37933905-37934027
Coord C2 exon
chr29:37935604-37935675
Length
123 bp
Sequences
Splice sites
3' ss Seq
CAACTCTGTTCTCTCCCCAGTTC
3' ss Score
10.21
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CCCTCCCCGCTGTGGTAAACCACCAGCACTCACCCACCACCACCCCGGCAGGGATGGAAAACTATCAAGAGGTCCCCATCACCATTGCCAAAGAAG
Seq A exon
TTCCCAAGCTGCCCATCCAGGTCCAGGCCCCGCCCCCCGAAGACTCGAATTCCAGCTCGGACTCAGACTATGAGCACTATGACTTCAGAACCCAGCCTCCTGTGGCCCTGACCACCTTCTACA
Seq C2 exon
ATTCCCAGCGGCACCGCTTCACAGAGGAGGAGGCCCAGCAGAACAGGTTCCAGATGCCCCCACTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=0.690 C2=1.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(25.0=69.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGCTGTGGTAAACCA
R:
CTTCCTCCAGTGGGGGCATC
Band lengths:
166-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development