MmuEX0010251 @ mm10
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10791382-10794237:-
Coord C1 exon
chr19:10794142-10794237
Coord A exon
chr19:10792828-10792944
Coord C2 exon
chr19:10791382-10791453
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCCTCTCTTCTCTTCCCAGCTC
3' ss Score
10.27
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CCCTCCCTGCTTCAGTGAACCACCAGCAACTGTCTACTGCCAACCAAGCAGGGATCAATAACTACCATCCTGTCCCTATCACCATTGCCAAAGAAG
Seq A exon
CTCCTATGCTGTTCATCCAGCCCCGGGTCCCTGCAGACTCGGACTCCAGTTCTGACTCCGACTATGAGCACTATGACTTCAGCTCCCAGCCACCTGTGGCCCTGACCACCTTCTACA
Seq C2 exon
ATTCCCAGCGACACCGGGTCACAGAGGAGGAAGCTCAGCAGAACAGGTTTCAGATGCCACCCTTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.475 C2=0.980
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCTTCAGTGAACCAC
R:
CTCCAAGGGTGGCATCTGAAA
Band lengths:
162-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types