BtaEX0008093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69291438-69293255:-
Coord C1 exon
chr21:69293166-69293255
Coord A exon
chr21:69292811-69292888
Coord C2 exon
chr21:69291438-69291543
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCGCTTATCCCCAGGAC
3' ss Score
9.09
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCAGCTCCACTAGTGAGCAAGAAACCCAAGCTCCAAAGCCAGAGGCGTCCTTAGGGGTCTCTGTGGCCGCGGGCGCAGAGCAGCCGGAG
Seq A exon
GACGTGGCCCGGGCCCCTCCGAGGCTGCCGGCTGTACCGCTGCCCAGCGCACAGACCCTCGCTCTGGCGGGACCAAAG
Seq C2 exon
CCAAAGGCACACCAGCTGAGCATCAAGTCCTTCTCCAGCCCCACGCAATGCAGCCACTGCACCTCCCTGATGGTGGGGCTGATCCGCCAGGGCTACGCCTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456_MULTIEX1-15/28=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.692 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCCACTAGTGAGCAAG
R:
GGATCAGCCCCACCATCAGG
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development