HsaEX0003523 @ hg19
Exon Skipping
Gene
ENSG00000198752 | AL117209.2
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:1738]
Coordinates
chr14:103418835-103421025:-
Coord C1 exon
chr14:103420939-103421025
Coord A exon
chr14:103420535-103420612
Coord C2 exon
chr14:103418835-103418940
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTGCTTGTCTCCCAGGAC
3' ss Score
10.85
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCAGCTCAGCTAGTGAGCAAGAAACACAAGCTCCGAAGCCAGAAGCGTCCCCGTCGATGTCTGTGGCTGCATCAGAGCAGCAGGAG
Seq A exon
GACATGGCTCGGCCCCCGCAGAGGCCATCCGCTGTGCCGTTGCCCACCACGCAGGCCCTGGCTCTGGCTGGACCGAAG
Seq C2 exon
CCAAAAGCTCACCAGTTCAGCATCAAGTCCTTCTCCAGCCCTACTCAGTGCAGCCACTGCACCTCCCTGATGGTTGGGCTGATCCGGCAGGGCTACGCCTGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.872 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAAACACAAGCTCCGA
R:
CGTAGCCCTGCCGGATCAG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)