BtaEX0008099 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43685753-43686616:-
Coord C1 exon
chr29:43686557-43686616
Coord A exon
chr29:43686159-43686264
Coord C2 exon
chr29:43685753-43685886
Length
106 bp
Sequences
Splice sites
3' ss Seq
GGGCCTGTCCCCCTCGCCAGCCC
3' ss Score
5.33
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCTGTGTTCCCCAGGACGCCTGCTGCCACCACACCCCCTGCAGAAAGTCCCCCTGCAAAG
Seq A exon
CCCGGCTCACACACTCTGCGTCCCTGGAGCTTCCCATCCCCCACTAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACG
Seq C2 exon
TTTGCGGCTACTTCTGTCACCTGACTTGTGCCCCACAGGCCCCCCCCTGCCCTGTGCCCCCTACCCTCCTCCACACGGCCCTGGGAGTGCACCCCGAAACGGGCACGGGCACCGCCTACGAGGGCTTCCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.194 C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
PF0013017=C1_1=PU(62.7=88.9)
C2:
PF0013017=C1_1=PD(35.3=40.0),PF0016924=PH=PU(5.9=15.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTTCCCCAGGACG
R:
CGACAGGAAGCCCTCGTAGG
Band lengths:
194-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development