RnoEX6006287 @ rn6
Exon Skipping
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221683729-221684548:+
Coord C1 exon
chr1:221683729-221683788
Coord A exon
chr1:221684039-221684144
Coord C2 exon
chr1:221684415-221684548
Length
106 bp
Sequences
Splice sites
3' ss Seq
CAGTGTGTGCTCCTTCACAGCCT
3' ss Score
6.79
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
AGTGTGTTCCCCAGGGTGCCTGCTGCCAACCCTACCCCTGCAGAGGGTCCTCCTGCTAAG
Seq A exon
CCTGGTTCTCACACACTGCGTCCCCGGAGTTTTCCATCCCCTACCAAGTGTCTCCACTGCACCTCGCTGATGTTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA
Seq C2 exon
CCTGTGGCTACTTCTGCCACTCAGCTTGTGCGACCCAAGCCCCACCCTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCCTGGGGGTGCACCCGGAAACAGGCACAGGCACTGCCTATGAGGGCTTCCTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.250 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
PF0013017=C1_1=PU(62.7=88.9)
C2:
PF0013017=C1_1=PD(35.3=40.0),PF0016924=PH=PU(5.9=15.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTTCCCCAGGGTGC
R:
CGACAGGAAGCCCTCATAGG
Band lengths:
194-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]