BtaEX0008180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033248 | CDH3
Description
Bos taurus cadherin 3, type 1, P-cadherin (placental) (CDH3), mRNA. [Source:RefSeq mRNA;Acc:NM_001244605]
Coordinates
chr18:36023650-36045872:+
Coord C1 exon
chr18:36023650-36023745
Coord A exon
chr18:36031412-36031480
Coord C2 exon
chr18:36045773-36045872
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTTCCATTTTCAGAAC
3' ss Score
12.03
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG
Seq A exon
AACTTGGCTAAGATTAAAGAGTGATGCATCAAAGGAAGAGGGATTAACTGCTAAACTCATCACATCCAG
Seq C2 exon
GGGAAGCCGGCTGCCATGCTGTGAGGACGCTCAAGCAGCCCTATGGAGTGGTCTAAGAAGAACTGAGGCCTCCTGCCAACAGTTCCAACTTGCCAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033248_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGCCAGAGGTGATCTTCA
R:
GTTGGAACTGTTGGCAGGAGG
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development