BtaINT0164401 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007488 | ZFP90
Description
ZFP90 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23329]
Coordinates
chr18:36023650-36029234:+
Coord C1 exon
chr18:36023650-36023745
Coord A exon
chr18:36023746-36027582
Coord C2 exon
chr18:36027583-36029234
Length
3837 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GCACTTTGGGTTTCTTTCAGACT
3' ss Score
7.67
Exon sequences
Seq C1 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAACCATGGATAGCAGAGGGAGAAATCCAAAGACCTGTCTGTCCAG
Seq A exon
GTAAATGAGGGAGAATCCAAGAATCAGTGCCGAATGTCGCACAGCTGAGGGAGAGGGAGGCACCTTCACTTTGCTGCCTTGGGAGCTCCTCCATCTGTAGAAGAGCTGCACCGTCTCCTGGATGACACCTTTGTGTGTCTCCCTTCTCCAGTAGGGCGTGTTGCTGTTGATAGGTCTCGGAGGAAAAGGTACCCCTTTTTCCTTTTTGAAAGTAGCCCTTTGTCTTAGTCAGAATGCCATCTCTCCCTGTCTTGTAACACTACTTCTGGATCATTTTCTCCTCTAGTATCCTCAGTCTCCCTGCATTGTTTGGAGATCTCTCTTCTTACTCATTCAGACATTAATTGAACTCCCATGTCTCCTCTTTGTTTCATCTTGCTGCTTTCACTGTCAATGCCCCAGACTTGTAGGAATACCCATAATCTTGATTCTCCCTCCCTCCAGACTTCTTTCCCTGACTGCACTCCTGTTCCACCTGTCTGGGGAGCAATGCTATCTTCCTCTTGTACTGCATTCCTGCCCATCTGATTCATTTCTACCCTCCAAAGTTCCTAGAGTATCCTTCTCTCCTGACTTCCCCACTTGTTCAGTGCTTCTTGGCTTTAGGTCTTTGGCTTTTCTTGCTTTTCCCTCCTAGTGAATCTGTCTTTAGGATTAGGAGCCTGCCTTCTGGCCTCCTCTCCATTCTTTCTATATTGTCCTTAGTTGCTCAGTCATGTCCGACTCTTTCCTAACCCATGGACTATAGCCCTCCAGGCTCCTCTGTTCATGGGGATTCTCCAGGCAAGAATACTGGAATGCCATGGAATACTGGGTTGCCATGCCCTCCTCCAGGGCATCTTCCCAACCCAGGGATCAAACCGAGGTATCCCACATTGCATGGCAGATTCTTTACTGTCTGAGCCACCAAGGAAGTCCAAGAATACTGGAGTGTGTAAACTTATCCCTTCTCCAGGGGAACTCTCCAGACCCAAGAATCAAACCAGTGTCTCCTGCATTGCAGGTGGATTCTTTACCAGCTGAGCTACCTGGGAAGCCCATTCTATATTACTTCTCTATAAAAGGGTGCCTGCCTTCTGATAGTTACAAGTCTTTATTCTGTGCTATAGACTCAGAATTGTCCTTACTTATACCCTGGTTACTTTTTTTTTTTTCTCTTCCCTTCCCACAGGACCCCTCCAATGCAAGTCCCACAGAGTTCTTATTAAAGATGTAAAGTCTAAGTTAATCATCTTGCATCCCCAGTCAGCACATTTTGCTACCTTACCTATTACCCATGTCTCCTCTTGCCCATTAGGAATTATCAGATTGCCAGTCCCTCAGGCCAGAAACCACAGTCAGTCTAGTCTTTTTCTTTCAATCCAAGTTATTTTCCTCCTTTGAGAAATATCTTAGATTTTCCTGCCTTTTAAATTGGACTGGCGACATCTTAAACCACACCTCAGATTTAGATTACTATAATTCCCAGTTGAAATTGCTCACTCTATCTTTTTGTAATCCATATTGGGTTTTTAAAATCATAGTTTAATTGAGGTATAATTGACAAACCATAAAATTCTCCCTTTAAAAGTGTACATTTCAATGGTTGTTTTGGGATAAATACAGAGTTGTGCAGCCATCACCACTATCTAATTAAGCAGAACATTTTCAGTATCTCCAAAAAGAAATCTTATACCCATCAGCAGTCACTTTCTACTCCTCATTCCCCCCAGTTCCTGGCAACCATTAAGCTACTTTTTGTCTCTATGGATTTGCCTATTCTAGACATTTTCTATAAATGGAATCATAATATGTAGCCCTTAGTGATTGGCTTCTTCCACTTAGCTTAAGGTTCATTCATGTTGTAGCATGTATCAGAACTTCATTCCTTTGTATTGCTGAGTAATATTGCATTGTATGGATATATCACATTTTGTTTATTCATCATGTCATGGACCATGTTGGATTTTAATGCTTTATCTCATAAACTACCATTCTCTGAAAGAACCTTTTACCTCATTATAGGAAGCAGAAACTCCCTTGATTTAAAGGTCCCCATCATACCTTCCAGTAATATCTTTCTATTCCTGCCAAAGAGAGCTCCACTAGGCTGAATTTCTTTTTGAAGCTACAGACCTGAGTACATTTCACCCCTACATACTTTCCGATGTTCTCTGTAAGAAGCATATAATTTCCCTCATTAGATAATAGTTTCTCTCTGTCCAAAGCCATCTATAAAGTCAAGGTCTCTCTCAATCATAAAACCTAATATATGCTAATATACTTGTTTCTTTCTTCCCTGGTCACAAATACCATTTATATAATCTCTACCACACAAAATCAAATTTACTACATGCCATCTATTGGTTTTTTTTTTTTTAAGTCATCAAAAGATTGTCTTGTTTTTATTCTTAGATTTTTAAGCTCCTGGAGTGTCTATTTATTATGTTTCTAAATATCTTCCCTCTGTGTTGCAGAGCATATAGAAGGCAGTCAGAAAATTATTGATTGTTATGGAATCTTGCTGGGGAAAGAACTTTCTCATTCATTAATTTCACCAAACATTTCTTGAATGTCCCACTGAGAAATATTCTAAAAGGAATGCAAAGTATTCTCTGTCTTCAGGAATTTAGAATTGAGTCTTGTTCCAGGGTAAGGAATTTGGGAATTTAGGATTCTTTAGTTACTGGTTCTTTTTTTCCCCTTTTAATGTTTATATGAAAATTTTCAAACATTTGGGAAGTTGAAAAGATTATACAGTGAACACTGTATACTACCACCATGATGCTATAATTGTTAACCTGTTGTTATGTAGTAACCTATTATATTTGCTTTATCACATATCTCTTTATCCATCTGTTAATCTGTCTTTCTTTTGATGCATTTCCTAATGAGTTGCAGACATGAGTACATTTCACCCCTGTATACCTCAGCATATATATAGTTGACTGGAGTTCAATATTTGTTCATAGTTCTTTTTATTTTTTTTATTTAAAAAAACATTACAGTGAAATTTACACCTCTTATAAGCACCATTTATTTCACTTTGACAAATGCATTCTCCTGTCTAACCCAAACTTCTATTGATACGGAACATCTCCAGCATTCCAGAAACCTCCCTCCCCTTAGTTTTTAAAAGATTACCATTCTTAGAACCTAGACAGTAATTAATTTCTGCTGTTAGTATTCAGAGGTTAAACAAAGGTTTAAAGGTCAATTTTTTAGGCAGATTAAAATAAATTGTTTTTGGTTAAGAGAGGTGATTAATGTAAAATCAGAACTCAAATAGACTAAAACCACAGCTCTAGTTGTAAGGGCAAGGATGATTTGCCTCTTGAAATATTACTTTTTTATCTGCTTGGGAAGTATAGCCCTCTATCTCCAGTTATGTCAAAGAATCATTTCAGTTAGTTCACTAGCTACATATTTTCTCAGCAAGGTTTGAAGATCTGAAGCTTCAGAAATGACTTGAAAGAAATTATGAAATGAATGTATTAGGAAGATAGATTCCATGGCAGTTTGTAAAATGGACAAAGAGGCATGAATAGCAGATAGGACTCTGCATGAAAGACTATGATCCTATTCTGTTTGTATCTGTGCCTAACTCTCTCATGCTAACTGGTTCCCTTATTCCCTATGTGGGCTTTCTCATTCTGGACTTATCCTTCATGATAGCTCTGCAATGATAGCTCTGTCATCTCTCTCCACTCTTCCTTTCTCCATTCAGGGTCTTCTTTTGAAGTTATTGGACTAATTTCAAAACAAAGTGATATATAATTGCTGTCTTTTCATTCCTACTATAGCAGTTTGTTTTAACAGAGGGGAATAGGGGATGTTTGCACTTTGGGTTTCTTTCAG
Seq C2 exon
ACTGGAAGACCAGGCCTGAAGCCAAATCTTCACATCTGCAGCAGAGTATATCTAAAGTATCCCTTAGCACAGATGAGCTCTCACATACCACGGGAGAAGATGCTTGGGACCTTAGTGGCCAGTTAGAAAGGCATAAGGAAAACTGGAAGAGACATCTGGGGCCAGATTCATCCACCCAGAAGAAGATAATCACACCAGAGGAAACTTGTGAGCAAAATACATTTGGTGAAAACTGTAGATTGAACACAGACCTGATTACACAACTGAACATTCCTCCAGGATCTAGTGAATGTGATACACTTGGGAGCAATTTGGGACATAATTCAGACTTACTTAATCAGAATAATATCCTTGCAAAAAAGAAACCTTATAAATGCAATAAATGTAGAAAAGCATTTATTCACAGATCATCTCTGACTAAACATGAGAAAACTCATAAAGGAGATGGAGCTTTCCCCAACGGTACAGATCAGGGAATTTATCCTGGAAAGAAGCACCATGAATGTACTGACTGTGGGAAAACCTTCCTCTGGAAGACACAACTTACTGAGCATCAGAGAATTCACACTGGAGAGAAACCCTTTGAATGTAATGTGTGTGGGAAGGCCTTCAGGCATAGCTCCTCCCTAGGTCAGCATGAGAACGCTCATACCGGAGAGAAACCCTATCAGTGTAGTCTTTGTGGAAAAGCCTTCCAGCGCAGCTCCTCTCTCGTTCAGCACCAGAGAATTCACACAGGAGAAAAACCTTATCGATGTAATTTGTGTGGGAGGTCGTTTAGGCACGGCACATCCCTCACTCAGCATGAGGTTACACACAGTGGAGAGAAACCCTTCCAATGTAAGGAATGTGGGAAAGCTTTTAGTCGATGTTCTTCTCTTGTCCAACACGAGAGGACACATACAGGAGAGAAACCTTTCGAATGTAGCATATGTGGGAGAGCTTTTGGTCAGAGCCCATCCCTTTACAAACACATGAGGATTCATAAGAGAGGCAAACCTTACCAAAGCAATAACTACAGCATAGATTTCAAGCACAGCTCATCTCTTACTCAAGATGAAAGCAATGTCCCTGAAGTGAAGTCCTATCATTGCAATGCCTGTGGGGAAGATTTCAGTCACATTGCAGACTTCTCTGACCATCAGAGGATTCACACTGGAGACAAGAACCCCTATGATTGTGAACAGGCCTTCAGTCAACAACCTATTTCTCATCCTGGTGAGAAACCCTATCAATGTAATGTATGTGGAAAAGCTTTCAAAAGGAGTACGAGTTTCATAGAGCATCACAGAATTCATACTGGGGAAAAACCCTATGAATGTAATGAATGTGGAGAAGCTTTCAGTCGACGCTCATCACTAACTCAACATGAGAGAACCCACACTGGAGAGAAACCCTATGAATGTATCGACTGTGGGAAAGCCTTCAGTCAGAGTTCATCCCTCATTCAACATGAGAGAACTCATACTGGAGAAAAACCCTATGAATGTAAGGAATGTGGGCGAGCTTTCCGAAAGAAAACCAATCTGCATGATCATCAGAGGATCCATACTGGAGAAAAACCCTATGCTTGTAAGGAATGTGGGAAAAACTTCAGTCGAAGCTCAGCTCTTACTAAACATATGAGAATTCATACACGAAATAAACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007488:ENSBTAT00000032517:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.285
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development