RnoINT0168736 @ rn6
Intron Retention
Gene
ENSRNOG00000020087 | Zfp90
Description
zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]
Coordinates
chr19:38601968-38608779:+
Coord C1 exon
chr19:38601968-38602063
Coord A exon
chr19:38602064-38607133
Coord C2 exon
chr19:38607134-38608779
Length
5070 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GCACTTTATATTTCTTTCAGACT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG
Seq A exon
GTAAATGAGTTAAGAATTCTGCTCATGTCTATCAGAGTAGACAGACAGGGCCACGGCTATGGAGAGGCACTTCTAACAGAAGGCATAGGAGCCGTCCGACCTGAAAAGGAAGTCGGGGCCATTCCTGGGTGACACTGCCTGTCTCTCTTCTCCAGTCAGGTGTTCCTGCTGTAGCTGAGTCTTAGGGGGAAACGTAGCCGAGTGCCGAAGTTACAGACATGTACTGCCGCACCCAGCTTCATACTGTCGTCAGAGAGAAGTTGACCCCACCATATCCCTTAATGCCAGTACCCAGAAGGCAGAGGCAGATGGCTCTCTGTGGGTTCTAGGCCAACCACGGCTACACAGTGAGACCTGGTTCAAAAGAAAGTAAAGACAGAACACAGAGAGTGGCTGGTACAAGGCAAACCTTGGTCTAAGCCTCAGGACACTGTTCCAAGCACACAGTCCCAAGGACTCAACACTGATGTCACTATTTAAAAAGAAGCATGTCAGAATTCTGAAAAAGCAAGGCCTTCAGAGATTATGTTTTCATTTCAACTCACAGAGAGAGCTCAGTTTGTGATGAGGCTTCTGACTAAGCTAGTACATTGTATTTGGTAAACATACACTCCCCAGTAAATCTGTACAGTACACACTGTTTGACAAGAGGTCTGTTTTAGGCCTTTGCTAATGGAAAAAGAGACAAAACTAACCCTTTATTAAAGTCCCACTGAGAAGAAGTCGAAAAAGAAAATGTAGCATTCTCTGCCCTTGGGAGTTTTACTTCCCCCACCCCACCCCCATCTCTCTCTCTCTCTATCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCAAGTGTCCTGCTGTATGGCCCAGACTATATTACCATTCCCATCCCCAGAAGCCCCAGAGTCCCAGCTCTCAAGTGCTGAGATTCCAAGTGAGTGCTACTGTGTATGACTCACATTATGAGTTTAGGATTGATTCTTGTCACAAACTTAGGAGTTTGAGTATTGGACTTCTTTAAATGTTGCTTCCTCTCCCAACATTTGATTATAAGGATGTCAAACATATGGAAAACCTGGGGAAATTGTACAGTAATTGTCATAAAGCTGCCACGTAGATGATCACAGATTTTGAGTGTGATACTTGCTTAGCTGCTTACCTCTGCATCTGTCCACGTCAGAACCACCTTTTTAGTGCATTCTCAAGGAAGTTGAAAACATAGGCACGAATATCATGAATTAGACCTCCGTGTTTTGGTGTGGTTTGTTTTCCTTAAATTCTGAAAATAAAATCTAGGGCTTTTCCCATTTTATTTATTTTTTTTTAAATGCTGTATCAACAAACTATATCCTGAGTCCAGGGTTCAACTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCACTCTACCACTGAGCTAAATCCCCAGCCCCCAGGGTTCAACTTTTTAATTAATTAACCTATTAATTATTCCTTAAATCTCAGGGCATGTTTATTCTGGGTCTTTTAAGAGATTTTTAATTATACATAGGCAAGGTATATGTTCGTGTATGCCAGAGCCGACGAAGCCAGAAGAGGGCATTAGGTCCTCTGGAGTTAGTGTTAACAGCTTGTTAGCTACCCAGTGTGGGTGCTGGGGACTGAGCTTGGGTCCTCTGCAAGAGCAGTGCATGATCTTAACCACTGAGCCACCTCTCCAGCCCCGCTCACTTGCTCTCATGGACATGGGTGTTTTGTTTGCATGTGCGTGTGTGCAGTTCGCAGAGACCAGAAGAAGGCTCCGGATCCCCTGGGACTGGAATTAACAGTTGGGAGCCTCCAAGTTGGTGCCGAGAACCAAACCTAGGTCCTGAAGCACAGCCAGCGTTCTTAACTGCTAAACCACCTCTCTAGTACCTCAGTTTATCTTTTTTTTTTTTAAACTTTGAAGATCTTTTTTTTTTTTAAAGATTTATTTATTTATTATATATAAGTACACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATAACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTCAGTTTATCTTTTTAGTTTTGCCGTTTGTGCCCTTGTTGTTTGTTTTGGGTTTTGGGGGAACATGTTTGATTTTTGTTGTTGTTTGAGTTTATAAGATCTATTTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTAGAAGAAGACGGCATTGCATCCCTTGGAGCTCAAATTACAGATATTGTGTGGGGCTCCCCCTGCTTATTGTGTGAGTGAGTGACGGGATCCATCTCTTGTACTCTCTCTTCAATAATGAGTGATCTTAACCCCTGGACCACCTTTCCAGCTGCACTTGTTTCTTCCGTGATTTGAACTTCTGAACCTTCTGCCTCTACCACCTGAGTTTTAGGAATGCAGGATGCACCATCACACTCAATTTGGTAGCAGGGATCAAAGTCAGGACCTTGGGATGCTAAACAAGCCTTCTACTAACTTGTTCTATTACCTGCCCTATAATATTTCTTTTTTTAGTGTAAATGTTGTATACACTAAAATGTACACTTACATGTTTAATACTGTGGTCTGACAAATGCATTCACCCTTCCCACCCATACTCCTCAGTATTTTTATTTTGTTTTTGTTTTTTTAGAGAGCATCTCCCTACATGTATCCAGATTGGCCTCAAACTCATGATCTATTCTCAGTTTCCCGGGTACTGGGGTTATAGGCATAACCAAGCATGCCTGGTGTCTCCCTTGCGTGTTTTTGTTTTTGGTTTTTTTTTTTTTAAGGTAACCATTTTTTTTTTTAGATCTATTTATTTTACACACACACACACACGCAAATGTCTTGCCTGTACCATATGCAATGCCTATGCCCACAGAGCTCAGAAGAGGGCATTGGATTCTCTTGAGACTGAAGTTACAGATGGTTATGAGTTTCCATGTGGGTGCTGGGAATCAAATCTGGTCTTCTACAAAAGAAACACATGGGGTTGGGGATTTAGCTCAGTGGTTGAGCGCTTGCCCAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAGAAAAAAAAAAAAAAAGAATAATTTCCAAGAAACACACGCTTTTTTTTTTTTTAAGACTTATTTATTTTATGTATGAATACACTGTCGCTGTCTTCAGACACATCAGAAGAGGGCACCGGATCCCACTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCGGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGAAACACACGCTTTTAAAACAGAGTCTACTCTTCAGTCCTAAAGATTACTAGTCTTGGAACCTAAAAATTAATGTTATCTAATATTAATATTCTATGGTATAAAACAGACCTAGGGATACATATATTGACTGAAATAAATCCTTGATCAAGAGAGGTAATGGGGGTGCAGGGAGAAGGGGCTCGCAGTTAGAGATTTGCTCTTGCAGAGGACCCAGGTTCAGTTCCCAGCACACACATGGTGGCTCACCACTCTAATTCCAGCTATAGAGTATCTGATGTCCTCTTGTGACCTCACTGGGCACCAGACACACATGGTGCACATACATGCCTGCAGGCAAACACTCATAAAATAGAACACATAAAATAAAATGAAACTTTAAAAAGGTATTTTAGTAAAGTGCCTGCTTTCAAACATGAGACTCTGGGTCTAGATCCCCAACACCCATGAAACACCAGAGATCTGTAACCCCAGCACTGGTAGGAGGTGGGAAGGAACAAGCAGATGGATTCCTGGAACTCCTTGGCTGGCTGGTGTGGCTGAATCAGTGAGCGCCCAGGTTCAGCGAGGGCCCTGTTTCAAATACTAGGCCAGCGAGATGGTTCAGTGGGTAAGACACTTGTTGCCAAATCAGATGGCCACATGGTAGGAGAGAATTTACTCCTTCAACTTCTTGTCTGACTTCTACACACATGCCCTGATGCTTGGATGTACACGTGCATGCACATGCACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAAAGAGAGAATATAAATACAGTTTTATTGGAACTTCTGTGTGGACCAGGCTGACCTCAAACTCTGCTCCCAGGTATTGGGATTAAAGGCTTATTTGGCAATAAATGTTATTTTAAAATTACAAACGTATATCACACACATTTAAAAAACACATACATAGAAGAAAGAAGGTGGCTATAGAATCAGAGCTCACACAGACTGAAACACAGACTGAAAATAACTTGCTTTCTGAAACATTACTTTTTCTCAGTTTTAGTAGTGTGTGGCCTCCAGACATGTCAAAGAATCTTTTCAGAAGACCCTTAGCTGAAGATTTTCTCTGCAGTATTTAGAAACCTGCTATCTAATAGTAACCAATTCCTTTTGTAAAGGAATTACAAAATCCTTTTTAAAGAAATGATAAAATGGATGTATTAGGAAGGCAGATTTCTGTTATGTCCCATAAAATAGCCAGGACGCATGGAACCCTGCGAGGTAGAACATGGTTCTGTTCTGTTCACATCTGTGCCTTGCACATTTAGGCTCCTTTGTGCATTCATTTCCTATCAGACTCACCCGCTTACGTGGGCGCTCCTCACTGTCTGACATGACAGACACTCTGGTGCCTCACTCTTTCTTTCCTGCAATTTAAGGTATCTGCACAGACTAAGGAACTGATTTAAAAAGACAGCCGTGCATGATTTATATCTCATTTATATCCCCTGCTGTAGCATGTTGTTTGAACTGCAAGGATGTGGGAACCTGTGCACTTTATATTTCTTTCAG
Seq C2 exon
ACTGGAAGACCAGGCCTGACATCAAATCGTGGAGTTCCCAGCAGGGCGTATCTGAAGTATCCCACAGTGCAAATGTTTGGTCGCACGCCACATTCGGAGATATCTGGGGTGTCAATACCCAGAGGCACCAGGAGAGTTGGAGAAGACATCTTGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCGCTCTGGAGAAAATAGCTGAGCAAAATAAGTTTGGTGAGGACTCAGGTTTGAGCACAGACTTGGTTCCACAATTGGACGTTTCTTCAAGCATAAGGCCCAGCGAATGTAAGACATTTGGAAATAATTTGGAATACAATTCTGAATTAGTTACTCAGAGTGGTATCCCTGCTAAAAAGAAGCCTTACAAGTGTGATAAATGTAGGAAGTCATTTATTCATAGATCATCACTCAATAAACATGAGAAAATTCATAAAGACGATGCTTATTCCAATGGTACGGATCAAGGAGTTCCTTCTGGAAGGAAACATCATGAGTGCACTGACTGTGGGAAAACTTTCCTGTGGAGAACACAGCTTACTGAGCATCAGAGAATTCACACTGGGGAGAAACCCTTCGAGTGTAATGTGTGTGGAAAGGCCTTCAGGCACAGCTCATCCCTTGGTCAGCATGAAAATGCACATACAGGGGAGAAACCCTATCAGTGTAGTCTCTGTGGAAAAGCCTTCCAGCGCAGTTCATCTCTTGTTCAGCACCAGAGAATCCATACTGGAGAAAAACCCTATCGGTGTAACCTCTGTGGGAGGTCATTCAGGCACAGTACGTCCCTTACTCAACATGAGGTCACACATAGCGGAGAGAAACCCTTCCAATGTAAGGAATGTGGGAAAGCCTTTAGTAGATGTTCTTCCCTTGTTCAACATGAGAGGACTCATACAGGAGAGAAGCCTTTTGAATGTAGCATATGTGGGAGGGCGTTTGGTCAGAGCCCATCCCTTTATAAGCATATGAGGATTCATAAGAGAAGCAAACCTTACCAAAGTAACAACTTCAGCATAGCTTTTGAGCCTAACATTCCTCTCACTCAAGGTGAAAGTGTGCTCACTGACGTAAAGTCATACCATTGTATTGACTGTGGGAAAGACTTCAGTCACATCACAGACTTCACTGAGCATCAGAGGATCCATGCTGGAGAGAATTCCTATGACTCTGAACAGGCCCTTCGTCAGCAGTCCCTGTCTCATCCCCGAGAGAAACCCTATCAATGCAACGTATGCGGGAAAGCTTTTAAAAGGAGTACGAGTTTTATAGAGCATCATAGAATTCATACTGGAGAAAAACCCTATGAATGTAATGAGTGTGGAGAAGCCTTCAGTCGACTCTCGTCACTGACGCAACATGAGAGAACCCACACTGGAGAGAAACCATATGAATGTATTGACTGCGGGAAAGCCTTCAGTCAAAGTTCATCCCTTATTCAGCATGAAAGAACTCATACTGGAGAGAAACCGTATGAATGTAATGAATGTGGCCGTGCCTTTAGAAAGAAAACCAATCTGCATGATCATCAGAGAATTCATACTGGAGAAAAGCCCTATGCTTGTAAGGAATGTGGGAAAAACTTCAGCAGGAGCTCAGCCCTTACTAAACACCACAGAATTCATTCACGAAATAAACTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020087:ENSRNOT00000027209:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.232
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]