HsaINT0185551 @ hg19
Intron Retention
Gene
ENSG00000184939 | ZFP90
Description
zinc finger protein 90 homolog (mouse) [Source:HGNC Symbol;Acc:23329]
Coordinates
chr16:68592376-68601039:+
Coord C1 exon
chr16:68592376-68592471
Coord A exon
chr16:68592472-68596946
Coord C2 exon
chr16:68596947-68601039
Length
4475 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTACTTTGGATTTCTTTCAGACT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GATATCAAGTTTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGGGAGAAATCCAACGACCTTTCTATCCAG
Seq A exon
GTAAATGAGTGAGAGTCAGGCATTAGGAATGAATGCAGTTAATGGCACAACTTAGGGAGGGGGAGATACCCTCCAGCAGCTGGCTTGCGATCTCCTAGATCTGCATAGGAGGCTGAAGCCATCGCCTGGCCGACACCTTGTAGGTCTCTCTTCAAAAGGGTGCTCATGCTCTTGCTGGATTATTTTTCCTCTGGTGGCCTCTGATTCCCTTCATTAATTAGAGATCCCTTCTCTTACTCATTCAGAATTGAACTCCCATATTTCTTCCCTGAATTGAACTCCCGTATCTCTTTGTTGTGTTGATCTCCCCCATCTTTTCCTTGTTTAGTCTTGCTGCTTTCACTGTCAGATGCCCCAGACTTGTAGGAAACACCCACAGCCTTCCTTGATTCTCTCTCCCTTGATAACCTGCCTTCAGACTATGTGCCTTGCCACCATCTTCCTTCCATCTCATGTTCATGCTGCTTTGACTCATTACCTCCCTCCACAGTTCTGTAGTATCCTCATCTCCCAGTTCCTCGCTTGTTAAGAGCTGCTTAGCTTTAGGTCTTTAGCTTTTCTTGCTTTTCTGCCTAAGTGACCCTGCCTTAAGGAACCTGCCTTCTAGCCTCCTTTCTTGATTACCTCCTTAACAGAGTACCTGCCTCCTGGTAGTTGCAGCTCTTTATTCTATGCCATAGACTCAGAAGTCTTCCTTATTTGTACCATGGTTACTTTTATCCTTCTCAGAAGTCACATAGTTCATATTAAATACATAAAATCTAAATCCGTCACCTTTCATCCCCCACCAGTATGTTTTGCTACCTTGCCTATTTCTCATTTCTACCCTTGCCTATTAGAATCCAAAGGATTTTTAATTGCTCAGGCTGGATACCCTAATTAGTTTAGTCTTTTATTTCAACCCAGGTTGTTTTCTTCCTATGAGAAGTAGCTTAGATTTTCTTGCCTTTTAACTTCTACTGGTGGCACTGTAAACCAGGGCCCAGATTTTTAAATTAATTAATTAATAATTTTATTGAGACAGGATCTCACTCTGTCACCCACGCTGGAGTGCAGTGGTGTGATCTCGGCTCACTGCAGTCTCTGCCTCCCGGGCTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTAGGACTATAGATATGTGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTGAGGAAGAAACGAGGTTTCACCATGTTGCCCAGGTGGTCTTGAACTCCTGAGCTCAAGCAATCCACCCACCTTGGCCTCCCAAAGTTCTGGGATTACAAGCATGAGTGACCACACCAGCCTAATTTTTTTATTTTGAGACAGGGTCTTGCTCTGTCACCCAGGGTGCAGTGCAGTGTCTCTATCACAGCTCCCTGCAGCCTTGACCTCCTGGGCTCAAGCAATCCTCTTCCCTTTGCTTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACTGCTGAGGTCCCAGATTTAGATTGCTATAATTTCCAGTTGGAATAGCTCACTCTGTTTTTTCTTTTTATAAATCAAATGGATTTTTAAAATTGTAGCTTTATTGAGGTATAATTCACATACCATGAGATTCACCCCTTTAGAGCATAGAGGTCAGTGGTTTTTTCATATATTCAGATAGTTGTACAAACAGCAACACTATCTAATTTCAGAACATTTTCCTCACACCAGCAAGAAATGTCATACCCATTAACAGTTACTCCCCATTCCCCACTCCTCTCAGTACCTGGTAACCATTAATCTAATTTCTATTTCTATGGATTTGTATATCCTGGATAGTTTGTATAAATGGAATCATATAATATGGCACTGGCTTCTTTCACTTAGCATGATGTTTTCAAGGTTCAATCATGTTCTAGCATGTATCAGTACATCATTCTTTTTTACCATTGAGGAATATTCCATTGTATGGATATATCACATTTTGTTATTCATCAGTTGCTGAACCACACTGGATTTTATTTATTTATTTATTTATTTATTTATTTATTTTGAGACAGAATCTCACTCTGTCACCCAGGTTGGAATGCAGTGGCTGTGATCTGAGGTCACTGTAACCTCCACCTCCTGGGCTCAAGCAGTTCTCATGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACGCACCAACTCGCCTGGCTAGTTTTTGTATTTTTAGTAGAGATGGGGTTTCTACTAAACTGCTATTGGCCAGCCTGGTCTCAAACTCCTAGCCTAATATGTTCATCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAAGCCTGAGCCACCATGCCCAGCCACTGGATTTTAATGCTTTATCTTCTTTTTTTTTTCCGAGATGGAATCTCACTCTGTCACCCAGGCTGGAGTACAATGGCATGATGCAGTGGCATGATCTCGTCTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATGCTCCTGCCTCAGCCATCTGAGTAGCTGGGACTACAGGCACACGCCACCATGCCCGGCTAATTTTTTGTATTTTAATAGAGACAGGGTTTCACCGTGTTGCCCAGGCTGGTTGCGAACTCCTGAGCTCAGGCAATGTGCCCACCTAGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCGCCCAGCCTAATGCTTTATCTTCTTAAAATTTCTGACAAACCATTGCTATTACTCTCTGTACTTTACTATAGAAAATAGAAACTCCCTGATTTAAAAGTTCCCTATCGTACTTCCAGTATTATCCTTCTATTCCTGCTAAAACAGATCCCCTTAGGTTGAACTTCTCTTAATATTCTCTGTATGCAGCATATCTTTTTCCTCATTAGGCAATATATTCTGCCTATCCAAAGCCATTTGTTCTTTGAGTTCAAAATCTATCTAATCCATGAGATGTGATATATACTAATATTTATTTCTTCCTTTCCTGACAACAAATATCATTTATATCATCTACACTATAAAAACTCAGATTTAATAATATGCCATCTGATGGTTTTACCCTTTTCTAGTTGCCAAAAGATTGTCTTGTTTCTCTTCAAGCTCTGTTTATTATGGTATTTTAATATATTTTATCTGTGTGGCAGAGCATATAGAAAGCAATCAGAACATACTTGACTGATCAGTAAGAAATCTGGTTAGCAAGAAAACTTTTCTCATTTAATCATTTCCACAAGCATTTTTTGCATGTCCCACTGAGAACAATTCTTAAAAAAATTACAAGGCATTCTCTGTCCTCAGGAGTTGAGTTGATTCTTATTGCAGGGTAAGGAGTTTGGGGATTTAGGGTCTTATTGTGATTTCCTCTCTCAACATTTTATTAGGAACATTTTCAAATAGGAAAGTTGAAAAAAATTTTACAGTCAATACCACATACCTACCACCAAGATTATCACATTTGTTGTTGTTAACATGTTATTTTATTTGCTTTGTTAACATGTGTTTTATTTGCTTTATCATGTATTTCTTTAGCCATCTATCAATCCATCTTACTTTTTGATGCATTTCCAAGTAAGTTGCAGGCATAATTACATTTCACCCCTACACTTTTAGTATGTATGTCGTTAACTAGAATTCAATTTTTTTCAGTTTTTAAAAGAAAATGTTATATGCAGTGAAATGTACAAGTCTTATATGTACCATCCAGTTGGTTTTGACAAATGCATTCACTTGCCTAACCCAAATTCCTATTGACATAGAACATTTCCATCACTCCAAAAAGCTCTCTGCCCTTAGTTTTTAAAGGTTATCGTTCTTAAACCCTAAAAATCAATTTGCTTGTATCAGTGTTCTGAAGTAAAAACAGGGACTTAAAGATCAATTTATTAGCCAGATTGAAATAAATTTTTTGGTCAAAGGAGGTAATTAGTGTAGAACCGGAGCTCAAATAGATGAAAACCACAGTACCAGTTGTAAAGACAAAGATGATTTGCCTCCTGATCAAGGACCTCCTTGATCTCCAAGGGTTATACTTTACAAACTGAGAAAATGCAGTATTTCAAATAATCTTTTCAGTTGTATCACTGGGTACAGATTTTCTCTGCAGCATTTGGAGACCTGGAACCTGAGAGTTGACAGTAAAGAAATTATGAAATGGATATATTAGGAAGACAGATTTTGTGGTGGTTTATAAAAGGATAGGAGGCATGGAGAGCATATAGGATCCTAAGATGGGCTGTGATCCTGTTCCATTTGTATCTGTGCCTAACACAGTCCTGCTCACTTATTTCCTTATTTTCTAACCAACCCTCCTAGATGGGCTTTCCTCATTCTCTGGACTTACCACATACTCTGAATCTGCAGTCTTTGCTATCATTTCTTCACTTTTCCTTTTCTCCATTTTGGGTCGTCTTCTCAGGATACAGGAGTAATTTCAAAACAGAGTCATATGTAACTTATATGTCTTTCTTCATTCCTACTCTAGCAGTGTATTTCAACAGGAAGGAATAGGGGACTTTTGTACTTTGGATTTCTTTCAG
Seq C2 exon
ACTGGAAGACCAGGCCTGAAGTCAAATCATCACATTTGCAGCAGGATGTATCAGAAGTATCCCACTGCACACATGATCTCTTACATGCTACATTAGAAGACTCCTGGGATGTTAGCAGCCAGTTAGACAGGCAACAGGAAAACTGGAAGAGACATCTGGGATCAGAGGCATCCACCCAGAAGAAAATAATTACACCACAAGAAAATTTTGAGCAAAATAAATTTGGTGAAAATTCTAGATTGAACACCAATTTGGTTACACAACTGAACATTCCTGCAAGAATAAGGCCTAGTGAATGTGAGACCCTTGGAAGCAATTTGGGACATAATGCAGACTTACTTAATGAGAATAATATTCTTGCAAAAAAGAAACCCTATAAGTGTGATAAATGTAGAAAAGCCTTTATTCATAGATCATCGCTTACTAAACATGAGAAAACACATAAAGGAGAGGGAGCTTTCCCTAATGGAACAGATCAAGGAATTTATCCTGGAAAGAAACACCATGAATGTACCGACTGTGGGAAAACCTTTCTCTGGAAGACACAGCTTACTGAGCATCAGAGAATTCACACTGGGGAGAAACCCTTTGAATGCAATGTATGTGGAAAGGCCTTCAGGCATAGCTCATCTCTTGGTCAGCATGAGAATGCTCATACCGGAGAGAAACCCTATCAGTGTAGTCTCTGTGGGAAAGCCTTCCAGCGCAGCTCCTCCCTTGTTCAACACCAGCGAATTCACACTGGAGAGAAACCCTATCGATGTAATCTATGTGGGAGGTCCTTTAGGCATGGCACATCCCTCACTCAACACGAGGTCACACACAGTGGAGAGAAGCCCTTCCAGTGTAAGGAATGTGGGAAAGCCTTTAGTCGATGTTCTTCCCTTGTCCAACATGAGAGGACTCATACTGGAGAGAAACCTTTTGAATGTAGCATATGTGGGAGGGCTTTTGGTCAGAGCCCATCCCTTTATAAACATATGAGGATTCATAAGAGAGGCAAACCTTACCAAAGCAGTAACTACAGCATAGATTTCAAGCACAGCACATCTCTCACTCAAGATGAAAGCACTCTTACCGAAGTGAAATCCTACCATTGTAATGACTGTGGGGAAGACTTTAGTCACATTACAGACTTTACTGACCATCAGAGGATCCATACTGCAGAGAACCCCTATGATTGTGAGCAGGCTTTTAGTCAGCAAGCTATTTCTCATCCTGGAGAGAAACCCTATCAATGTAATGTATGTGGGAAAGCTTTCAAAAGGAGTACAAGTTTCATAGAGCATCACAGAATTCATACTGGAGAGAAACCCTATGAATGTAATGAGTGTGGAGAAGCCTTTAGTCGACGCTCATCGCTTACTCAACATGAGAGAACCCACACTGGAGAGAAACCCTATGAATGTATTGACTGTGGGAAAGCCTTTAGTCAAAGTTCATCTCTCATTCAGCATGAGAGAACTCATACTGGAGAGAAGCCCTATGAATGTAATGAATGTGGGAGAGCCTTCCGAAAAAAAACCAACCTGCATGATCATCAGAGAATTCATACTGGAGAAAAACCCTATTCTTGTAAGGAATGTGGGAAAAACTTCAGCCGAAGTTCAGCTCTTACTAAACACCAGAGAATTCATACTCGAAATAAACTCTAGGAACCGTGAAATTAAGGAATTTGCAGAATGCTTTAGCTAAAATGTTCTGATTCAGGATCAGAGGATTCTTAGAGAGCTTGGGAATGTAATGAATTACGTGTGTGTTTATACGTTGTGTGTGGAGAAAACTGCCAGTAGACAGATTTTTTTTTTTTAACATAAAGACACATTCTCAGATCTGATTACAGACTAGTGTAAAAACAGCTACATGTATGTAGCTGGTTGGGGATGATATGCCTGTATGTTGGACTTTGCTTTTGAATATATGTATGCAGGATATCATCAAGTTTCAACATCTTGACTTGTGACCCCCAATGTCAACAGCTTTTTTAAAAAGCAAATTCCTGCAGTAATGACCAAAACCCATTTTAAAAATTGCTTGACAACTGCACTCAACTGCAGCTCTTACATTAACTTCACCATGGAAACCAGTTCCAACTCCAGGAAGTCACCATTCAAAGAATTAGATCAACTAGCCCAACCACTTCATTGTACAGATGAAGACTGAAAGCCAAAGATGTGAAGTGGTTTCCACAGTATGATACAGCCTATAAGGGTAAAGCTGGGTTAAAAATGCAGGTTTCCTGGATTTGGGGCCCCATGGCCTTGCCAGTGAAAAGGTTATTTTTGGACTCAGAGGGCTTTAAAATAAATTTTAAGATGTATCAGATACACAAACATTTAATGGGCACCTATGGGTTGGACACTTTGAGAATTCTTAAAAGTATAAGTGGGAGCAAAATGTATGCAAATTTATCACAAACTATTTAAAGCAACTTCTTGGAGGCTTACAAACCACAATTTAACAGAAACTGTAGATGGTTGAACTACTAGTGACTTTTTTCCCCTTTTCCCAGTTACAATTATACTTTCAGCTAACATATGCCAGTTTCACAGAACTATTAAGTCCCCTTATTGTACTTTTTATGGCATGCCCATGAAAAAGCACTTTCTTAAGCCTACAGTATCAGATCAATGGGAAAACAACAGAAAACTAAGAGGAGAATTTTCCCGTTAATTTTCTTGCAGAAAAGTTAAGTCTAATTGCCCATTGCCATAAATTTTGCCTTGTACTCAGAGAAGCAACATGCACTGGCTCATTTTATGTGCAAAGAAAAGATTTCACCATTAAAAAAATTAACTTGGCTAGGTATGGTGTCTCACACCTGTAATCCCAGCACTTTGGGTGGCTAAGGCAGATAGACTGCTTGAACCCAGGAGTTCAAGACCAGCCTGGACAACATGGTGAAACCCCATCTCTTTAAAAAAAAAAAAAAATCCAAAAATTAGCTGGGCATGGTGGCATGCAGTGGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTGGAACCCGGGAGCAGAGACTGCAGTGAGCTGAGATCACACTACTGCATTCCAGCCTGAGCAACAGAGCAAGACACACACACATCAATTTATTTTAGTTGTATAATGCTTTTCTATTAGTAAAGCATCAGCTAAGCTTCAGTGGCCTGCTCCATCCCCTAATGACTCCCATGGGCTATCCTAAAGGAACTTCCAGAACCTTTGTTGGTGTGTTGACATTGACCATGCAGACCAATTTGGGCACAACTGGACATTGATTCCTTTTACACAAGAGCTGCCTCCCAAAGATAGATAAATTTTCCCAGCCCTAAATATGAATCATGGGGCAAGATATTGGTCGTATTGATGGTGAACCTTTCCTACTGGATTCTTTGCATGCCACATAGCAGGATTCATTGCCTTTCTCTCATCATGGATGGCATGCAGCAGCACCCAAGTATTCTTCATTCTTTGCAGGGAAAAAATTGTGCATGGGGGCTGAAATGTAATATGTGTAGCTCAATTAGTCTCTCCTCTGTGATGCAAAATGGAATATTCAATGGCAGATCTGCCCTTCTGAGATGCTGACCATCCAAAACACCTTGTTTATGGTGCACCATGATTAGCTCACACACAATGCCAAGGCTGTGCTTCTATTATCTGATACATAGTTTGACAATGGGTAATTCTACTCAGACCCTCCCTACTGATTGGCTAGGATGCCTGTCAGGAACTCATTATGCTACTGGTTGTTTGGGGATCCCCATAGTGGACTACTTTCAGGAATGGCATGAATTGTAACCAACTGAGTGCTGCCCCCACTGTTACGGAAGTTTATAAAACCTTAGTTCCAGAAGACCCAAAGGAGAGTACTGGTTTGTGTTTGGTGCTTGGCCTAGATCCAGCCACCACTCTGAAACTCAGCACATCTTCATTGACAGGGAGGGAGCCCAGGACATATGTGTGGCTCATTGACCAGAAGGCTTTCTTAGTCCCAACAGCCATGAACCATGCACTTATGGATACCCAGCCTTTTAGGGCTACGTGAAATGCATCCTTGTAACATCATTGTATTCTTTCAATAAATAGCCTTCTGAGTTGAATGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184939-ZFP90:NM_133458:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.247
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF0009621=zf-C2H2=WD(100=4.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)