MmuINT0180039 @ mm9
Intron Retention
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:108943415-108949789:+
Coord C1 exon
chr8:108943415-108943510
Coord A exon
chr8:108943511-108947812
Coord C2 exon
chr8:108947813-108949789
Length
4302 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GCACTTTATATTTCTTTTAGACT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAATTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAAAGAAATCCAAAGACCTTTCTGTCCAG
Seq A exon
GTAATGAGTTCAGAATTCTGCTCCTAGAAATCAGTGTAGACAGGGCTACAGCTTATGGAGAGAGACTTCTTCTAACTAGAGGCGTGGGAGCTGTCTGACCTGAAAAGGAAGCCGAAGCCATTCCTGGGGCTGTCTCTCTTCTCCAGTCAGGTGTTCCTGCTGGAAATAAGTCTTATGGGGAAAACATAGACAAGTGCTGAATTACAGGCATGTAATACCGCACCCAGCTTTATACTGTCATCAGAGATTGGTTAACCCTTTAATGCCAGCATTCAGAAGGCAGAGGCAGGTGGCTCTCTGTGAGCTCGAGGCCAGCCTCCGCTACAATAGTGAGACCTGGCTGGTCTCTAAAGAAAGTGAAGACAAAACACAGGGCGAGGCTGGTGTAAGGTGAACCTTAGTCCGAGCCTCACAACACCGTGTCCCAAGCACACAGTCCCCAGGAGTCAACACTGCCGTCACTATTGAAAAAGAAGCATGTTAGAATTTTGACAAAGCCAACTTTTCAGAGACTGTGTTTTCATTTTTAACTCACAGAGCGAGCTTAGTTTGTGATGAGGCTTCTGACCAGCCTGAGTGCATTGTGTTTGGTAAACGTACACTCCACAGTAAATCTATGCAGTACACACTTCGGGGAGAGGTCTGTTTTAGGCCTTTAGCAATGGAAAAAGAAACAAAACTAACCCTTTATTAAAGCTCCACTGAGAGGAAGTCTGAGAAGAAAATGTGGCATTCTCTGCCCTTAGGAGTTTTGCTTCTTGTTTTAGTTGTTAGAAAGCGTGTGGCTGTGTGGCCCAGCCTGGCTTCAAACTACCCCCCTCTCTGCCCCATCCCCCCCCACACACACACTCTCAAGTGCTGAGATTACAAGTGAGTGCTATTGTGTATGGCTGACACTATGAGTTTAGGATTGATTCTTGTTGCAAACTTAGAAGGTTGAGTATTGGACTTCTTTAAGTGTTGCTTCCTCTCCCAACATTTTGTTATAAGAATCTCAAATATATGGAAGACATCGGAAAGTTGTACAGTAGTTATCATAGAGCTGCCACCTAGGTGATCACAGACTTTGGCTGTGATACTTGCTTTGCCTCATGCCTCTTCATCTACCCACATAAGAACCACCTTTTTAATGCGTTCTTAAGGGAGTTGAAAACATAGGCATGAGTCTCGTTAGTTAGAGTTCTTTGTTTTGTTTTCCTTTGAAATACTGAAAAGAAAATCCTGGGCTTTTCCCAAGTTCTTAAAAAAAAAGAAGTTCTGTATCAACAAACTATATCCTGAGTCCAGGGTTCAGCTTTTTAATTAATTAACCTATGAATTATTCCTTAAATCTCAGGGCATGTATATATAAGCAAGAGTAGGAAGTATATGTTCCTGTGTTCCCGAGCCACCAAAGGCAGAGAGGGCATTGGATCCTCTGGAGTTAGTGTCACAGTCAGTTGTTAGCTCCCTAGTGTGGGTGCTGGGAACTGAACTTGGGTCCTTCACAAGAGCAGTGCGTGCTCTTAACCACTGAGCCACCTCTCAAGCTCTGCTCACTTGTTCTCATGGATATGGGTGTTTTGTCTGCACGTAGGTGTGTACCACATATGTGCAGCCCTCAGAGGGACTGGAGTTAACGGTTGGGAGCCTCCAAGTCAGTGCTGAGAATCAAACCTCGGTCCTCTGGAAGAGCAGCCAGTGTTCTTAACTGCTGAGCCACATCTCACCTCTTTAGCCTCCCAATTTATTTTTATAGTTTTGGGTTTTTTTGGTTTTTTGGTTCTTTTGTTTGGTTGGTTGGTTGGTTGTGTTTGGTTGGTTGGTTGGTTGGTTGGTTTTGGTTTTTGGAGGGACATGCTTGATTTTTGTTGTTTGAGTTTGTGAGATCTATTTTATTTGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGGATAGAAGAAAAAGCCCATTGCAGCCCTTGGAGCTTAAATTACAGTTATTGTGTGGGGCTCTCAATAAGTGAGAGTGAGTGACAAGATCCAATTCATGTACTCTCCGTTGAATAGCAAGTAATCTTGACCCCTGGGCCACCTTCCCAGCCTTAGGTTTTTCTTCCCTGATTTGAACTTCTGATCCTTCTGCCTCCTCCACCTGAGTTTTGGGAATGTGGGGGATGCCCCGTCACACCCTGTTTATTTGGTAGCAGTGATCAAAGCCAGGACCCTGGGAGTGCTAGACAGACTTTCAACTAGCTTGTTCTATTGGCAGCCCTATAGGGTTTATTTTTTAAGTAAATGTTGTATACACTAAAATGTTCAACCCTGTTGGTTTTGACAAGTGCATTAGCCCTTCCAACCCACACTCCCCAGTATTTTCATTTTTGAGAGAGCATCTCCCTACATGTATCCAGATTGGCCTCAAACTCGTGATCTCTTCTGCCTCAGTTTCCCAGGTACTAGGGTAATAGGTATAAGCAAAGGTGCCTGGTGTTTCCCTTAGTTTGTTAAGATAAACATTCTTTTTTTTAGATCTATTTATTTTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAAGAATGTCTTGCCTGCATGTATATATGTGTACTGTGTGCATACCTGGTACCCACAGAGCTCGGAAGAGGGCATTGGATTTCCTGGGACTAAAGTCACAGATGGTTATGAGATTCCATGTGGATGCTGGGAATCAAATATGGTATTCTACAAAAGCAACAAGTGCCTCTAAACACTGAGTCTATACTCTTAAGTCCTAAAAATTACTATTCTTAGAACCTAAATATTAATGTTATCTAGTATTATTATTCTATGGTAAAAAACAGACCTAGGGGATATATCTATTGACCAAAATAAATTCTTTGTAAAGTGAGGTGATGGGGAAGGGGGACTAGAGAGATGGCTCAGCAATTAGAGATTTGCTCTTGCAGAAGACTCAGATTCAATTCCCAGCATCAACATGGTGTCTCACAACTCTGTAAGTCCAGCTGTAGGAGATCCAGTGTCCTCTTCTGACCTCAATGGGTACCAGGCACACATGGTGCATATATAAGCCTGCAGACAAAACACTCATAAAATAAAATGAAACTTTTAAAAAGGTATTTTAAGAGCACTTTAAAAAGAAAGAGAAAAAGGTTTGGGGACTGGGAAGACAGCTAAGTTAGAAAAGTGCCTGCTTTCAAACATGAGAATCTTGGTTTAGATCCCCAACACCCATGAACACTAGAGATCTGTAACCCCGGCACTGGTAGGACGCAGGAAGGGAGAGACAGATGGATTCCTGGAACTCATTGGCTGGCCGGTGTGGCTGAATCGGTGAGCTCTCAGGTTCAGTGAGAGCCCTGTTCCAAATACTAAATAGGCCAGTGAGATGGCTCAGCAGGTAAGACGCTTGTTGCCAAATCTGACGGCCTGGGTTTGGTCCCTGAGTGTCACATGGTAGAAGGAGATAAGTGTCACATGGTAGAAGGAGATGAGTGTCACATGGTAGAAGGAGATGAGTGTCACATGATAGGAGAGAATTTACTCCTTCAACTTTTGTCAGACCTCTGCACATGTGCTCTGATGCTTGGATGCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGAATATAAATGAGTTTTATTGGAACTTTCTATGTGGACCAGGCCGACCTCAAACTCTGCTCTCGTCCCAGATGTTGAGCTTAAAGGCTTGCTAGGCAATAAATGTTATTTTAAAATTACAGATGATAGAAGAGAGATGGTCGCTATAGAATCAGAGCTCACACAAACTGAAACTTCTCCTAGTTTTAAGACCAAAAATAACTTGCTTTCCGAATCATTACTTTTTCTCAGTTTTTAGCATGGTGTGTGGCCTCCCCATATGTCAGAGAATCTTTTCAGAAGGTCCTTAGCTGGAGATTTTTTTTCTGCAGTATTTAGAAGCCTGCTATCTAATAGGTTACTGTAAAGGAATTATAAAATGGATGTATTAGCCAGGCAGGTTTTTGTTATGTAAAATCAGTACTCGCACACTTAGGCTCCTCTGTGCTTCTGTTTCCTATCACACTCGCCCACTTACATGGGCTTTCCTCACTCTCTGGATGTGACAGGCACTCTGGATTTGTAATATTCGCTGGTACTTCACTCTTTCTTTTCTGCAGGCATCTTTCTCTAAGGGACTGATTTAAAAATACAGCCATGCATGATTTCTATCTCATTTTCTTATCCCTACTCTAGCATTTTGTTTGAGCTGCAAGAAATGTGGGAACTTTTGCACTTTATATTTCTTTTAG
Seq C2 exon
ACTGGAAGACCAGGCCTGAGTCCTCACGGAGTCCTCAGCAGGGCGTATCTGAAGTATTCCTCAGAACAAATGTTTTATCACACACCACAATAGGTGATATCTGGAATGTCGCTATCCAGGGGCATCAGGAAAGTGGGAGAAGACATCTGGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCACTCTAGAGAAAAAAATTGAGCAAAACAAAGTTGGTGAAGACTCTAGTTTGAGCACAGACTTGGTTCCACAACTGGACATTTCTTCAAGTATAAGGCCCAGTGACTGTAAAACATTTGGAAATAATTTGGAACACAATTCAGAACTAGTTACTCAGAGTAATATCCTTGCTAAAAAGAAGCCTTATAAGTGTGATAAATGTAGGAAATCATTTATTCATAGATCATCACTTAATAAACACGAGAAGATTCATAAAGGCGATCCTTACTCCAATGGTACAGACCAAGGAGCTCAGTCTGGAAGGAAACACCATGAGTGTGCGGACTGTGGGAAAACCTTCCTCTGGAGAACACAGCTCACGGAGCACCAGAGAATTCACACTGGGGAAAAACCCTTTGAGTGTAATGTGTGTGGAAAGGCCTTCAGGCACAGCTCGTCCCTTGGTCAGCATGAAAACGCACATACAGGAGAGAAGCCCTATCAGTGTAGCCTCTGTGGGAAAGCCTTCCAGCGCAGTTCATCTCTTGTTCAACACCAGAGAATCCACACGGGAGAGAAGCCCTATCGCTGCAATCTCTGTGGGAGGTCATTCAGGCACAGCACGTCCCTCACGCAACATGAGGTGACCCACAGTGGGGAGAAACCCTTCCAGTGTAAGGAATGTGGGAAGGCCTTTAGCAGGTGTTCTTCCCTTGTCCAGCATGAGAGGACCCATACAGGAGAGAAGCCTTTCGAGTGCAGCATTTGTGGGAGGGCATTTGGTCAGAGCCCATCCCTTTATAAACATATGAGGATTCATAAAAGAAGCAAACCTTACCAAAGTAACAACTTCAGCCTGGCTTTTGTGCCTAACACTCCTCTTCCTCAAGGTGAAGGCCTGCTTACTGAAGTAAAGTCGTACCATTGTAATGACTGTGGGAAAGACTTCGGTCACATTACAGACTTCTCTGAGCACCAGAGGCTCCACGCTGGGGAGAATTCCTACGGCTCTGAACAGACCCTTCTTGGTCAGCAGTCCCTGTCTCATCCCCGAGAGAAACCCTATCAGTGCAACGTATGTGGGAAAGCTTTTAAAAGGAGTACAAGTTTTATAGAGCATCATCGAATTCACACTGGAGAGAAACCCTATGAATGTAATGAGTGTGGGGAAGCCTTCAGTCGACTCTCGTCACTCACGCAACACGAGAGGACCCACACTGGCGAGAAACCCTATGAGTGCATTGACTGCGGGAAAGCCTTCAGTCAAAGCTCATCCCTGATTCAGCACGAAAGGACGCATACCGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGCGGGCCTTTAGAAAGAAGACCAATTTGCACGACCATCAGAGAACTCACACTGGAGAGAAACCCTATGCTTGCAAGGAGTGTGGGAGAAACTTCAGCCGGAGCTCCGCCCTTACTAAACACCACCGAGTTCACGCCCGGAATAAACTGCAGGAAAGCTAAACAATGGGATGGGGAGGAGGCACGGCCGAACATCTGCTTCCAACCCAGTGTCAGAGGATTCTGAAAGTCTGAGAATGTAATTATGTGTTTGGACACTGTGTATAGAGAAAACTGCCACTAGAAGAAAAAAATTTTAAATTAAAGCCATTCTTTCATACCTTATTACAGGCTTCTTGTAGAACTACGTACGGCATATGTAGTCGTTTGGAAATGATGTGACCTTACTAAAGCTTTTGAATATATGTGTGCAGAGTCACCAAGTTTTAACAGCTTGATATGTAAATCCTGTTGTTCACAACCTTGAAAGAAAGAAAGAAAACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907-Zfp90:NM_011764:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF139121=zf-C2H2_6=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: