BtaINT0165821 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014593 | ZNF615
Description
zinc finger protein 615 [Source:HGNC Symbol;Acc:HGNC:24740]
Coordinates
chr18:58106493-58108160:-
Coord C1 exon
chr18:58108105-58108160
Coord A exon
chr18:58106810-58108104
Coord C2 exon
chr18:58106493-58106809
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CATCTTAAG
5' ss Score
-21.33
3' ss Seq
TTCATTGTTATCTTTCCTAGACA
3' ss Score
7.93
Exon sequences
Seq C1 exon
AAAATCCCTTTCCAACATCCTTTCTGAAATTGAGATTCTGTTGTCCTTCTGTACAT
Seq A exon
CTTAAGTCCTGACATTACCTTGAATCTTCTTTACCTTCTGTGTGTGTGCATGTGTCATTTCAGTCATTTCCAGCTCTTTGCAACCCTATGGACTGTGGCCTGCCAGCCCCTTCTGTCCATGAGATTCTCCAGGCAAGAATACCGGAAGGGGGTGCCATTTCATTCTCCAGGGGATCCTCCTGGCCCAGGGATCAAACCTGCATCTCCCACATCTCCAGCATTGGCAGGCGGGTTCTTTACCACAAGCACCACGTGGCAAGCCCCTCTTTACCCTCTCTGTTTAACACCTTTGCTGTTCCTCTTCTTTGTTTCATTAGAGAAGATCTTTCTAAAATTTCTCATTCTGTTTGTTAGGCTAGGGAGCCTAAACAAAATCATAAAATCTCATTAATGAGTCTTATCCTTCTTTCCAAATAAATCCTCATTTCTTCTATGTCTCATTACTTCCTTTGCTTCTTCAAACCATTGTCATGTTTGAACTGCCTACTTTATTCCTTATCTTGCTTTTTCTGTTTCCTTTCCACCGCAGAATATGGCTTCAATTTAAGTAAAGAATTTTTTTGTGTTTCTCCAATACCAGCACCATGTCTGGTTTGTGGATTAGCCATTTAATAAGGATGTGTTGAATGAATGTCTTTCACCATTTTGAAACTGGGTGTCCCTCCAGTCTCTGTGAGGTGATGCTAACAGTGACGGTATTTAACTGTCCCCAGGGCCTTATTTATAAAGCAAACAAATCTATATTTATTCATTGTGAATTTACTGTATTTTACACTGATGGCTGACATCTTTTGGGTTGTTTGGTGTTTTATATTATCGTGTTTTTAACCATTTCCAAGAGATTGGAGTTAGTGCTTAATGGATGCAGAGTTTTTCAGTTGGAGAAGATGGAAAAAAAACCCCAAAAAACTAGCAATATAAGGTGCTGGTGGTTGTACAACATTGTGATTATACTTAATATCACAGAACTGTACATTTAAAAATGGTTAAGGGACTTCCCTGGTGGTCGAGTAGTAGGACTCTGCTCCCACTGCAGGGAGCATGGGTTCAATCCCTCGTCAGGGAACTAAGATCTTCCATGGCCCAGCCCTGCCAAAACCATTAAAACAGTAAAATTTATTTTATATATATTTAACTATAATTTTGAAAAGTTTTTTAAAGATAAGGTAATTTTATGCTTGGAATTTCTTTGATATCTTGGGTTTTTCATTAAAGAGCCAGCTTACCCCAAGGTATTTTTGAAATAGTTTTATTCCATCTGATGCTCATAAAGTGTTCATTGTTATCTTTCCTAG
Seq C2 exon
ACATTAAGGAAGTGGATGATCATGTGCAGTTGCACTGGCAAAACCAAAATATGCCGAAGTGTCATGAACAGAATGCATTTGGGAATATTATTCATCAGAGCAGAAGTTGTTTTCCTTTAAGGCCAAATTATGATGTATTTGATTTACACAGGAAAACTCTGAAATCATATCTAGATGTAACTAACCAGAAAAAAAGCTGCAACAAAAAGGAGCCTGCTGAGTTTAATTGGGATGGGAGATTCTTGCTCCATGCTCATCATGAACAAACTCATACTGAAATTGAACATCAGGAAATACACAAAACAGAGAACACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014593:ENSBTAT00000054072:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTCTGTTGTCCTTCTGT
R:
TGGGTGTTCTCTGTTTTGTGT
Band lengths:
342-1637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development