HsaINT0188000 @ hg19
Intron Retention
Gene
ENSG00000198093 | ZNF649
Description
zinc finger protein 649 [Source:HGNC Symbol;Acc:25741]
Coordinates
chr19:52392488-52399820:-
Coord C1 exon
chr19:52399725-52399820
Coord A exon
chr19:52395151-52399724
Coord C2 exon
chr19:52392488-52395150
Length
4574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTATTGTTCTCTCTCTTAGAAA
3' ss Score
9.97
Exon sequences
Seq C1 exon
GGTATCAAGCCGGCAAACCTGATGCCCTCACCAAGTTGGAACAAGGAGAACCACTATGGACACTAGAAGATGAAATCCACAGTCCAGCCCACCCAG
Seq A exon
GTAAGTGAGAGAGAACCAGCAAGAGGGGAAGGCAGCGGAAGTCACATTCTGGTCATTTAGAGAAGGCATGACAGTTGTGAAAGTGTCTAGGGAGACAGAAACAGCTGCCACATCTTCTTCTCCCCTAGGATACAAGAGCTCTTTTTCTTATAGGAATTCAGAGAAGCATACATACCCCTTTATCTCTTCTTGGAACTGATCCCTATTCATTTCTTCTTAGATGTTGAGTTGCTTCCCCTAAGTTCTTCTTGCTTGGATTTTCACATCTTCCCATTCTTCTTCATCACTTGTCAGAGGATCATTTTGTGTTTCTGAGGCAAAAACGACAAACTGTTTTTTTCTCTGTCACATAGTCACTCAACACAGCATTTATGCCACTGGATATATAGGGGTTGTTTTCTCACAGCCCAGGCAATTCTCCAGCAGACATCAGCTGGGTATCGTCTGTTTCAAATCAGCTCTGACCCTATCTACCTGATACGGCATCAGATCCCACCGGTTAAGGGCTCAGTCCAAGACTGTGTCCCACTTCAGATGCCAGTGGCAAGTCCCAGGTTGTCACCTCAGCTTCTGACCAACCAGCTGTAAAGTAGGGGTTCCCAAGACCCTCTCCTCAAGTTTGATTAATTTGCTAGAACAGCATTTATATGTATATGCGTGTGTGTATATATGTGTATGTGTGTGTGTATGTGTGTATATACATTTATATATATACTTTATATATTTATATGTATATATACATTTATATAAGAGAGAGAGGGAGAAAGAGTGCCATAAGCATTGTCTAGAGTTACTGATTCATCAAGTGAGATAAGAACTGAGGCATAGGAGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACAAAGTCAGGAGTTTGAGACCAGCTTTGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGACATGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCGCCATTTCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTTTCAAAAAACAAAAAGAAACGAAAAACAAAAAAACAAAAAAACTGAGGCATCGGTATGTGATTATGGTTTGTTTTTCACATTCTGACACTATGTATTTTTCACCTTGAATTTTCTTTTCATGAAATGGTTTTTAATACACTACAATATAATAATATCTTCCATGTCTAAATTCCCATTCTACTTTGCATCCCAATCACACACAAGCCACTCCCATAGATACCACATCAGTGTGATTTGGTGGTGCTTGAGGTTCCTTTGCTACTCTGGAGTCAAGGGCCTGGTTTTCATTCTTCTTCATGTAAGATTGAAATACATCTTGGTCATTCATGCATTTCTTCATCGAAGGACAGATTAGCCAGGCTGAAGAGAGGTCATACTTTTCCATCTATTAAGCATTTCTTAAAGGCTAGATCTTTATTAAAGGAGTTTTCATGACACTGTCCATACCAAGGCCTCTTGCTCTGTGAGTCTGGTTTTGTTAGAATTGAGTTGGGGGCCTGGGCGTGTCTTTACATGAAGCTCTCTCGGGGGCTGTTTTTATGAGTTGATGAACTGTAGCCATAATACACAGTAGAAGAGACTGAATTTAGTGAGAAACAGAAATGTCTTTCTTGAGCAAAGATTTTGTTAGCAAAAATAGGGCAAATTTTTATGTAATATTTACAAATTAAACTTTTGAACGTGTGAAATGTTTTTGTTACAATTCAGGGCTATACAAAGTTAAAGTGAATAGTAAATACAGAAAGAATTGTAGGACTTTAGAAGAAATGTAACCTACAGTGGTCTAGACAAGATGGAGAAAGACAGACTGATAAAATATCTTATGCAAGAGACATAGCTAGGTATTGAATTAAGATGAAGACATATGACAAGAAGTTGTAGAACTGGAAATGCAAGGCCATGTGGGGACTGTCAGAAGATTAGCCTGAAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGTTGGGCAGATCACCTGAGGTCAGGAGTTTGAGACCAGTCTGGCCAATGTGGTGAAACCCTGTCTCTACATAAAATACAAAAAATTAGCCAGGCGTGGTGGCACGTGCCTGTCATCCCAGCTGCTCGGGAGACTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGAAGTGAGCCAAGATCGTGCCACTGTACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAGAAAAAAAAAAGATTAGCTTGAAACTGGTCACATGGAGGCCACAGTTAGAAGATATTTGCTGGGAAATGGTGAAGTGGGAACTTAAAGTGGATGCGTCATGGTAATGGTAAAACTTTTATTGTTCAGCTCCTGCTGTGAATTTTCTGTGCCAGTAATTCAGGGTAGTGGTGGAGGTAAAGTTTTGTATTTTTCTAGCTCTAGGTAGAGCTTACCTTTCACCTGGTGGCAGTACTATAGCAATCATACTGTATAGCTGATGTTCTAAGAAAAACTAAAAGTAAAGCTGCCTCAAGTCTTGATTCAGAAGTAGGGAGGTGGTCCTTGAGGGCTCCATTCACCGATGCCAACAGAGACATAAGTACAAAATTCAGAGAGTAGAGGCTGTTAGTGGCAAGGTGAGGAATTAGTATATTAGGGACAGCAAAGTGGAAAAAAAATCCAATATGACATCTGTGCAAGTAGGGCATGATGAAGAAGGTGACAGTTTCCATATTTGGTGCAGTGGCAGAGCTGTGTGGAGAGGACCACGTGTTCTGCTTGCATGTTCTGAAAGTCCATAGGGATCACCCTGTTTCTCTTTCTGTTGGAACATATGAGAATATATCATAGCCAGGTAGATACAAGGTGTTAACCAAAAAATTGAGGAGGCAAAGAGAAACTTTATATTCTAACAAAAGATGATTCGCAGATCTGAGTGGTGTGACTTTGAGGAAGTGGAAAAAACACACATCACTGAAGAGGGGAAACTTTTTTTTTTTTGCCTTGCAGGAGGCTTTTTGCCTTCTAGGATTTGCTTTGCATACCTATTCAGTGAGAGATGGGGAGTCTTATGAATATCTTTATGAGAATCAGCAAACATGTGCATAGTGAGCAAACATATATGTAACATATAATCCACTTTCATTTTGGAGTGGAGTTTTAACATTAAAATGAGGTGGAATTTGACTGTATGCTAGCAGGTCTTTTACAGGATATAAGAAAAGTCTGCACAGACTCCGGCAGCTGACCAAAACAGCTGGTGTTTATCAGGAGAAGGATATTGAGATCAGTCTCCTGTCCAATCATAGCTGCAGTTATGGCCTGTGGAATGCTGTTGGGGGTGAGGGGCATCAGTTAGTCAGCATCTGGTGGTCCGGGAGCTGCAATTGTTTCAATATTGCTTGTCCCAAGGCCAGTGTTTGTTTAGCTGCTACAGAAAAAGAAACAAAACAAAACAAAACAAAAAACACTCGTGGCAGTTAGAACATAGTTTATTCTTTAAATGTAGGGGGTGTGTGACTTAACCCTTACCTGTATGTCCTTAGACCTAGTTTATAGTTTGGTATCTTATTGCTACAAAGAGTCTGTTCCATCAGTCTTGTGATCTCTGTTTTAACAAAGGTTAGAGTATTGACTGCAGTTTTCCTGGAAATATGAGATTGGTGCTCTAGGAAAGTTAGCGTGATGATGGTCTACAGAATGGAGAAGGGCATATTTTAGCACCCAACAGTCTAATAGGATTAGGATGAAGTCAAAGGCTGTGTATCCAACATTCTAACTTGCCTTTCTGGGATATTTATTCTACTACCTATGTCTGCTGTTTCCCTACTCAGGATTATTCTTTTTTAAATTAAAAAAAAAGTTTTTGTAGAGACAGTCTCCCTATTGTAGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTGATCTTCCCACCTCACCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCTGGCAAATTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGGCAGACTGGAGTGCAGTGGAGCGATCTTGGCTTGCTACAACCTCTGTCTCCCAGGTTCAAGCGATTTTCCTGCCTCAACCTCCTGAGTAGCTGGGACTACAGGCACGTGCCACCACGCCCAGCCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCTTGACCTTGTGATCCACCCGCCTTGGCCTCTCAAAGTGCTGGGATTACAGGCATAAGCCACCGCACCCAGCTGGCAAATTTTATCTTATATGTATTTAACTACAATTCTTAAAAGTTTTTTTAACAGATAGGGAACACTTATACTTGGAATTCCTTCCATGTTGGTATTATAGGGGTTCCAGTAAAAAGCCAGCCAACCCCAAGGCATCTTTGAAGCAGTTTTATTCCGTGTGATGATCATGGAAGGATTTATTGTTCTCTCTCTTAG
Seq C2 exon
AAATTGAGAAAGCTGATGATCATCTGCAGCAGCCCTTGCAAAACCAAAAAATACTGAAGAGGACGGGACAACGCTATGAACACGGAAGAACTTTGAAATCATATTTAGGTTTAACCAACCAGAGCAGAAGATACAACAGAAAGGAGCCTGCTGAGTTTAATGGAGATGGAGCTTTTCTCCATGATAATCATGAACAAATGCCTACGGAAATTGAATTCCCTGAAAGTAGAAAACCCATCAGCACCAAGTCACAATTCCTTAAACATCAGCAAACACACAACATAGAGAAAGCCCATGAATGCACTGACTGTGGGAAAGCTTTCCTCAAGAAGTCTCAGCTCACTGAGCATAAGAGAATTCATACAGGAAAGAAACCCCACGTGTGTAGCTTGTGTGGGAAAGCCTTCTACAAGAAGTACAGGCTCACTGAACACGAGAGAGCTCACAGAGGAGAGAAACCCCACGGGTGTAGCTTGTGTGGGAAAGCCTTCTACAAGAGGTACAGGCTCACTGAACACGAGAGAGCTCACAAAGGAGAGAAACCATACGGGTGCAGTGAATGTGGGAAAGCCTTCCCCAGGAAATCTGAGCTTACTGAACATCAAAGGATTCACACGGGAATTAAGCCCCATCAATGCAGCGAATGTGGGAGAGCTTTCTCCAGAAAATCACTACTCGTTGTACATCAGCGAACTCATACAGGAGAGAAGCCTCATACATGCAGTGAATGTGGAAAAGGCTTCATTCAGAAGGGCAATCTCAACATACATCAACGAACTCACACTGGAGAGAAACCTTATGGATGCATTGACTGTGGCAAGGCCTTCAGCCAGAAGTCTTGCCTTGTAGCACATCAGAGATATCATACAGGAAAGACTCCCTTTGTATGTCCTGAATGTGGGCAACCCTGTTCACAGAAGTCAGGACTCATTAGACATCAGAAAATTCACTCAGGAGAGAAACCCTATAAATGCAGTGACTGTGGGAAAGCCTTCCTTACAAAGACAATGCTCATTGTACATCACAGAACTCACACGGGAGAGAGACCCTATGGCTGTGATGAGTGTGAGAAAGCTTACTTCTATATGTCTTGCCTTGTTAAACATAAGAGAATACACTCAAGGGAGAAACGGGGGGATTCAGTGAAGGTGGAAAATCCTTCCACAGCAAGTCACAGCTTAAGTCCTAGTGAACATGTGCAGGGGAAAAGCCCTGTTAATATGGTAACTGTGGCAATGGTGGCAGGGCAGTGTGAGTTTGCCCACATCCTGCATTCATGATAAACAGTTTGCTGTTTGATCATATAGCCTCCAGCGGAATGCTGAGTTTGTCATGTCCCATGGGCCTTTGGCTCCCTGCACTAATATGTATAGTAGGGTTTACAAGATATGAAATATATTTTACTTTTTTATATCTTATAAACCTCACTACCCCTCCCACAATATTGTTTTTCATTTACTATCTTGATCATAGAGTTTGGCTGGGGAGGGGGGCAGTTTTAGAGGCTTCCACTTGGTGTTCCTCAGAATGATATCTCTTACTCCGGGGGCCAAGGTAGGGGTTAGCTTTTGTTCTCTTTGTAGTTTAGATTGTATCTCTTGCCTTGTTCAAGTTCACAAATCTTTTTGTGTATACACATATGTACATGAAAATGATGTTCATGCTTTTTATTATTTTACCCTTCATTATTTCATTTTTTATAGTTCTCATAGCTATGTCTTTCAGTTCACTAATCTTTTTTCCACAGTGTTTAATCTGTCATTAATCCCATCCAAAGTATGTTTTCTCTCAGAAATTGTAATTTTTAACCTCTAATAATTTGACATGGGTTTTTCCCTGTTATATCTTTCATATCTTTATTTATCATGGTTTTACTTTTAACCTATTTATGCTTTCATATTTAAAGTGGGTGTTTAGTGGGCAACATACAGTTGGGCCTTCCTTTTTTATCCAGTTAACAATCTCTGTCTTTTTACTGGGGTATTTAGATCATTTACGTTCAATGTATTGATGTTTTTAGGTTTAAATTACTAACTTACTATTTGTTGTTTATTCTATGTCTTCTTTGTTCTCCTTTTCTTCTTTTTCTGCTTTCCCTTAGAGTAGCTGAGTGTGTTTATATTACATATTGTCTCCTTTGTTGGCTTATTAACTGTAAATCCTTGTCATTTGATTCCTTGAGATTTTATAGCATACATCATTGTGAGGGATTGCATATTTATGTCCTCTCCAAATTTACATGTTGAAGTCCTAATCCCTAAGGGATGGCATTAGGAAGTGTGACCTTTGGAAGGTAATTACATCTTGAAAGTGGAACCCTCATGATGAGATTATGTGTCTTATGAGACAACACAGAAGAGAGTTTGTTTTCTCTTTCTCTGCTCTTTGCCATGTGAAGACAGAATGAGATGACCATGCATAAACCAGGAAATGGACTCTCACTGGACACTAGACCTGCCAACACCTTGATTGTGTTTTAGAGTCCAGTTCTAGAGACTCCTCAGCCTCTGGAACGTGAGAAATGAATGTTTGTTAAGGCAGTCAGTCAGTCTATGGTGTATTTTTTCTAGTAGCCTGAACTGACTGAAAGAAAATCATGAACTTATCATTCTAACTTCAAGGACATTATATCACTTACTGTATAATAAAATAATCTTACAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198093-ZNF649:NM_023074:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.315
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)