BtaEX0008758 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038171 | CFHR5
Description
complement factor H-related 5 [Source:HGNC Symbol;Acc:HGNC:24668]
Coordinates
chr16:77895761-77897488:+
Coord C1 exon
chr16:77895761-77895937
Coord A exon
chr16:77897007-77897189
Coord C2 exon
chr16:77897309-77897488
Length
183 bp
Sequences
Splice sites
3' ss Seq
GACAGTTTATTTTGTGTTAGGGC
3' ss Score
5.13
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
AAACAGAATGTCAGCTTCCATTTTTAGAAGCAAACGTAGATGCTTATCCAAAGCAAGAAAAATACAAAGTTGGAGATGTGCTGAAATTTTCCTGCAGACAAAGACTTAAAAGAGTTGGGCCGGATTCAGTTCAATGCTACGAATTCGGATGGTCACCTAATTTTCCAACATGCAAAG
Seq A exon
GGCAAGTGCGATCCTGTGGTCAGCCTCCTCAACTGCCCAATGGAAAAATGAAACACAGAAAACAAGAAAAATACGAACACAGTGAAATGGTGGAATGTGATTGCAACCCTAATTTTGTAATGAAGGGGCCTAAGAAAATACAGTGTATGGATGGAGAATGGACAGCTCTGCCCACGTGTGTTG
Seq C2 exon
AACCAGGGAAAGCATGTGGATTTATGCCTCAGCTTGAGAATGGCTATAGCCAGCCCTCTGTCCCTCCCTATCGACATGGAGTTTCAGTGGTGTTAAGTTGCAGAAATGCATATACAATGATTGGAAATACTACAATTACATGTATTGATGGAATATGGACCGAGCTTCCTAAGTGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038171_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=88.7)
C2:
PF0008415=Sushi=WD(100=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGGCCGGATTCAGTTC
R:
ACACTTAGGAAGCTCGGTCCA
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development