RnoEX0072893 @ rn6
Exon Skipping
Gene
ENSRNOG00000042369 | RGD1564614
Description
similar to complement factor H-related protein [Source:RGD Symbol;Acc:1564614]
Coordinates
chr13:56921990-56923854:-
Coord C1 exon
chr13:56923681-56923854
Coord A exon
chr13:56922255-56922437
Coord C2 exon
chr13:56921990-56922169
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACATGATATTCCTGTAATAGGTC
3' ss Score
6.65
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
AAATTGAATGCAGCATTCCCATATTAGACCCACGCTTAGTTGTTTATCCCAGGAAAATAAAATATACAGTTGGAGATTTGTTGAAATTCTCTTGCCGACCAGGACACAGAGTTGGACCAGATTCAGTGCAATGCTATGACTTTGGATGGTCCCCTAGTTTTCCGACATGTAAAG
Seq A exon
GTCAAGTAAGATCATGTGGTCAATATCCTGAACTACTCAATGGGGAAATAAAGGGAACAAAGAAAGCTGAATACAGCCATGGTGACGTGGTGGAGTATGATTGCAAACCTAGATTTCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGACGGGAAGTGGACAACCTTGCCGACATGCGTTG
Seq C2 exon
AGGAGAAAAGAACATGTGGAGACATTCCTGCACTTGAGCATGGCTCTGTCAAGTTTTCTGTCCCTCCCTACCACCACGGAGATTCAGTGGAGTTTACTTGTGCAGAAACCTTCACAATGATTGGACAGAGATCAGTTTCTTGCATTAGTGGGAGGTGGGCCCAGCTTCCTCGATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042369-'7-8,'7-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=88.7)
C2:
PF0008415=Sushi=WD(100=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCTTGCCGACCAGGACA
R:
CCCACCTCCCACTAATGCAAG
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]