GgaEX1000501 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr8:2650438-2653516:-
Coord C1 exon
chr8:2653343-2653516
Coord A exon
chr8:2651829-2652011
Coord C2 exon
chr8:2650438-2650620
Length
183 bp
Sequences
Splice sites
3' ss Seq
GTTTGATCTCCTGATTTCAGTGG
3' ss Score
5.72
5' ss Seq
TTGGTAATC
5' ss Score
3.39
Exon sequences
Seq C1 exon
CAATTGAATGTAAACTGCCAGTACTGTCCCATGGACAAGCTCATCCCTCAAAGAACACATACTACAATGGAGATGTTGTGAAATTCATCTGTGTAAAGAATTACATAAGAGTGGGCCCTGCCTCTTCTCAGTGCTATTACTTTGGATGGTTTCCATCACCACCGACATGTAAAG
Seq A exon
TGGATCCCAGAGACTGTGGACCTCCACCTGAAATCACCAATGGAAATGTCATCGGTGGCTTTCTGGAACGGTATCAGCATGGAAACAGAATGGAATACGAATGTGATACCCCATTTACATTGGTTGGATCAAAGGAAATAGAATGTTTGGATGGGCAGTGGTCATCTCTTCCTTCTTGCATTG
Seq C2 exon
AAAACAAGATGCCATGTGGATCACCTTCTTCTGTCTTGAATGTTGTTCTTCTCCAGCAAGATCGAGCCCAGTTTTCTCATGGCGATGAAGTAACCTACAGATGTAGCCAAGGCTCTGAGAATGCTACCAGAATGAGAACAAAATGTCTTAATGGGGAATGGAAGCCCTCGCCTCTTTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002431-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.016
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=88.7)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAGTACTGTCCCATGGA
R:
ATCGCCATGAGAAAACTGGGC
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]