RnoEX0020640 @ rn6
Exon Skipping
Gene
ENSRNOG00000030715 | Cfh
Description
complement factor H [Source:RGD Symbol;Acc:620428]
Coordinates
chr13:57008415-57009750:-
Coord C1 exon
chr13:57009577-57009750
Coord A exon
chr13:57008680-57008862
Coord C2 exon
chr13:57008415-57008594
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATACAGTATTTCTGTAACAGGCC
3' ss Score
4.98
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
AAAGAGAATGCAGCATTCCCCTGTTACACCAAGACTTAGTTGTTTTTCCCAGAGAAGTAAAATACAAAGTTGGAGATTCGTTGAGTTTCTCTTGCCGTTCAGGACACAGAGTTGGAGCAGATTTAGTGCAATGCTACCACTTTGGATGGTCCCCTAATTTCCCAACGTGTGAAG
Seq A exon
GCCAAGTAAAATCATGTGACCAACCTCTTGAAATCCCGAATGGGGAAATAAAGGGAACAAAAAAAGTTGAATACAGCCATGGTGACGTGGTGGAATATGATTGCAAACCTAGATTTCTACTGAAGGGACCCAATAAAATCCAGTGTGTTGACGGGAAGTGGACAACCTTGCCGATATGCGTTG
Seq C2 exon
AGTATGAGAGAACATGTGGAGACCTTCCTGCACTTGAGCATGGCTCTGTCCAGTTATCTGTCCCTCCCTACCACCACGGAGATTCAGTGGAGTTCACTTGTGCAGAAACCTTCACAATGATTGGGCATGCAGTAGTTTTCTGCATTAGTGGAAGGTGGACCGAGCTTCCTCAATGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030715-'21-29,'21-27,22-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.5)
A:
PF0008415=Sushi=WD(100=88.7)
C2:
PF0008415=Sushi=WD(100=88.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACACAGAGTTGGAGCA
R:
CATTGAGGAAGCTCGGTCCAC
Band lengths:
251-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]