BtaEX0009187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012815 | CLEC12A
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr5:100394539-100401104:+
Coord C1 exon
chr5:100394539-100394706
Coord A exon
chr5:100396113-100396270
Coord C2 exon
chr5:100400826-100401104
Length
158 bp
Sequences
Splice sites
3' ss Seq
AAAGTATGCTCTTCTTCCAGAGC
3' ss Score
6.79
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCATGGAAAAATTGAATAAGCTACAAAATTTCAAAGAAGAACTTCAAAGAAATATGTCTCTACAACTCATGCAGAACACAAATAGTTCCCAGAAAATCAGGAACCTTTCTATCAAACTTGAAGAAATAGCCACCAAATTATGTCGTGAGTTATATACAAAAAACAAAG
Seq A exon
AGCACAAATGTAAACCTTGTCCAGAGGAGTGGATGTGGCATGATGACAAATGCTACCTTCTACATGCCTACCAACGTCAGGAAACGTGGCAAAAGAGTGATGAGATTTGTTCTGGCTACAATGCCAGCCTGTTGACGATTAAAAGCAAAAGTGTGTTG
Seq C2 exon
GTTTACAAGAAATACAAGTGTCATAAATGATCAGATGTATTGTGGATATGTATATTATGCAACCTTTTATTATATTAAGTGCACTGAAACTAAAAATATTATATGTGAGAAGCTTGCCCAACCAGTGAAGACTGAGAGTATACTAATGAGTGAAATATTGGATGGAAGAAAATAGTTAGTGCAATTATTTTGTTCCAAGTATTATCTTGCACTTAAAGGACACTTTGGGGACCATACATCTTATTGACCACATCTATAGAATAAAGATACAGTACGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012815_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137861=DUF4179=PD(59.2=78.9),PF083915=Ly49=FE(44.4=100),PF074328=Hc1=PU(84.6=96.5)
A:
PF083915=Ly49=PD(32.5=77.4),PF074328=Hc1=PD(13.8=17.0),PF0005916=Lectin_C=PU(27.0=50.9)
C2:
PF0005916=Lectin_C=PD(37.0=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTACAACTCATGCAGAACACA
R:
CAGTCTTCACTGGTTGGGCAA
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development