HsaEX6065139 @ hg38
Exon Skipping
Gene
ENSG00000172322 | CLEC12A
Description
C-type lectin domain family 12 member A [Source:HGNC Symbol;Acc:HGNC:31713]
Coordinates
chr12:9979336-9982129:+
Coord C1 exon
chr12:9979336-9979524
Coord A exon
chr12:9980582-9980733
Coord C2 exon
chr12:9982020-9982129
Length
152 bp
Sequences
Splice sites
3' ss Seq
AAACTATGTTCTTCTTCCAGAGC
3' ss Score
9.01
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
Exon sequences
Seq C1 exon
TTCACGTAACTTTGAAGATAGAAATGAAAAAAATGAACAAACTACAAAACATCAGTGAAGAGCTCCAGAGAAATATTTCTCTACAACTGATGAGTAACATGAATATCTCCAACAAGATCAGGAACCTCTCCACCACACTGCAAACAATAGCCACCAAATTATGTCGTGAGCTATATAGCAAAGAACAAG
Seq A exon
AGCACAAATGTAAGCCTTGTCCAAGGAGATGGATTTGGCATAAGGACAGCTGTTATTTCCTAAGTGATGATGTCCAAACATGGCAGGAGAGTAAAATGGCCTGTGCTGCTCAGAATGCCAGCCTGTTGAAGATAAACAACAAAAATGCATTG
Seq C2 exon
GAATTTATAAAATCCCAGAGTAGATCATATGACTATTGGCTGGGATTATCTCCTGAAGAAGATTCCACTCGTGGTATGAGAGTGGATAATATAATCAACTCCTCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322-'8-13,'8-11,10-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(56.2=100),PF054737=Herpes_UL45=PU(3.3=3.1)
A:
PF083915=Ly49=PD(17.9=39.2),PF054737=Herpes_UL45=FE(82.0=100)
C2:
PF0005916=Lectin_C=FE(35.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAAACTACAAAACATCAGTGA
R:
TCCACTCTCATACCACGAGTG
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains