BtaEX0009216 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039980 | CLECL1
Description
C-type lectin-like 1 [Source:HGNC Symbol;Acc:HGNC:24462]
Coordinates
chr5:100762265-100768615:+
Coord C1 exon
chr5:100762265-100762592
Coord A exon
chr5:100766538-100766624
Coord C2 exon
chr5:100768517-100768615
Length
87 bp
Sequences
Splice sites
3' ss Seq
AAATTTATCCAATTTTATAGATT
3' ss Score
5.87
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TTCAAAATCATTCCAACTGAGGGCAGAAAACTAACTGAAGTGCAAGAAACTACTGCATGGAGAGTAGTTTTCTTTCAGATCATGCAAGTGTCCAATAACCTATTGCCTTGATTGATAAGGCTGAGCACATTGTTTTTATGTTTTATTCATTGAGGGAATCTACCAAACTTGGGAGAGAGGAAGGAAATTATCTGTCTCAATATATCTCATTTACAGGAGGTTTGCAAAAATATAGGATTCTTTTTAATTTCTGCAATGGCTGGAGAGATAGTCTATGCTGATATCAAACATACATCTTCAGAACATTCATCTTCACTCCAGAAATCTG
Seq A exon
ATTCTCACCACCACGGAATTTTCCTGAAAGTTGGGTGTGCAATGATTATCATTCTTCTTGTAATAGTAATTGTGCTGAGCATGCTTG
Seq C2 exon
TTATTCAGTTCAAATCTGCAAGACAAACTGAAGTGGATAATGAATTAAAGAAGAAATATTGTACTGAGCAAAGTAAATCTGAAGCAAACAACTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039980_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF113683=DUF3169=PU(22.9=88.0),PF074236=DUF1510=PU(6.0=28.0)
A:
PF113683=DUF3169=FE(30.2=100),PF074236=DUF1510=FE(24.8=100),PF150691=FAM163=PU(15.8=63.3)
C2:
PF113683=DUF3169=FE(34.4=100),PF074236=DUF1510=FE(28.2=100),PF150691=FAM163=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATGGCTGGAGAGATAGTC
R:
TGTTTGCTTCAGATTTACTTTGCTCA
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development