HsaEX0015643 @ hg19
Exon Skipping
Gene
ENSG00000184293 | CLECL1
Description
C-type lectin-like 1 [Source:HGNC Symbol;Acc:24462]
Coordinates
chr12:9875240-9885715:-
Coord C1 exon
chr12:9885545-9885715
Coord A exon
chr12:9882187-9882272
Coord C2 exon
chr12:9875240-9875409
Length
86 bp
Sequences
Splice sites
3' ss Seq
AAATCTATTCAATTTTGTAGATT
3' ss Score
5.69
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTACTTATCAGAAGTTTCTTTGCAGAAATATGATTGTCCCTTCAGTGGGACATCATTTGTGGTCTTCTCTCTCTTTTTGATCTGTGCAATGGCTGGAGATGTAGTCTACGCTGACATCAAAACTGTTCGGACTTCCCCGTTAGAACTCGCGTTTCCACTTCAGAGATCTG
Seq A exon
ATTCTCACCACCATGGAATTGTTCTTAACGTTGGATGTGCAATAATATTATCCTTCTGGTAATAGTAATTGTACTGAATATTTTGG
Seq C2 exon
TTTCTTTCAACTTTTCTACTGTCCATAAATCATGTCCTGCCAAAGACTGGAAGGTGCATAAGGGAAAATGTTACTGGATTGCTGAAACTAAGAAATCTTGGAACAAAAGTCAAAATGACTGTGCCATAAACAATTCATATCTCATGGTGATTCAAGACATTACTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184293-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGGACATCATTTGTGGT
R:
CCAGTCTTTGGCAGGACATGA
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)