BtaEX0009450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001847 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr8:27101785-27136215:-
Coord C1 exon
chr8:27136021-27136215
Coord A exon
chr8:27131489-27131544
Coord C2 exon
chr8:27101785-27101961
Length
56 bp
Sequences
Splice sites
3' ss Seq
AAAACTCTTTTTATTCACAGAAC
3' ss Score
7.06
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CTTTACAATGAATTACATATTTGTTTTGAAACCACAAAATCAAGTGAAGCTATGCTCCGACAAAGTGTTGTTACTCTTCAGGATCAGCTATTTCAAAAAGAGCAAGAAAATGCTAAATTAAAAGAAAAGCTTCAGCAATCACAAGAAACACTCTATCCTTTACCTCGAGAATGTGATTCAGACCGCTCAGAACAG
Seq A exon
AACCTGAGCATCCGTATAGAAAGCCTACTGAGTCTATGATGAAGCTCCTAGAAATA
Seq C2 exon
GTTTCTCAACAGCCATCTTTATCAAGCTTAGAAACCTTAATGGTCTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTGAAAATAGCAAATGAAAAACTGTCAGAGAACAGGTCTACCAACAAGGGTTCCTCAGAGAAGAGCATCTTGACAAGTACTGAAGGGAAACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001847_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=0.000 C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061355fB1814
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTCAGACCGCTCAGAACA
R:
TGGTAGACCTGTTCTCTGACAGT
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development