BtaEX0009449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001847 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr8:27101785-27146087:-
Coord C1 exon
chr8:27145925-27146087
Coord A exon
chr8:27136021-27136215
Coord C2 exon
chr8:27101785-27101961
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGATATATTTTTTAAAACAGCTT
3' ss Score
3.68
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGGAGTTGCAGGAGCTACAGAATCTTTACAAACAGAACAGTGCACATACAGCACAGCAAGCCGAGCTGATCCAGCAGCTTCAGGTTCTGAATATGGACACACAGAAAGTACTGAGGAACCAGGAAGATGTTCACACAGCTGAAAGTATATCGTATCAAAAA
Seq A exon
CTTTACAATGAATTACATATTTGTTTTGAAACCACAAAATCAAGTGAAGCTATGCTCCGACAAAGTGTTGTTACTCTTCAGGATCAGCTATTTCAAAAAGAGCAAGAAAATGCTAAATTAAAAGAAAAGCTTCAGCAATCACAAGAAACACTCTATCCTTTACCTCGAGAATGTGATTCAGACCGCTCAGAACAG
Seq C2 exon
GTTTCTCAACAGCCATCTTTATCAAGCTTAGAAACCTTAATGGTCTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTGAAAATAGCAAATGAAAAACTGTCAGAGAACAGGTCTACCAACAAGGGTTCCTCAGAGAAGAGCATCTTGACAAGTACTGAAGGGAAACGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001847_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.323 C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCAGCAGCTTCAGGTT
R:
TGCTCTTCTCTGAGGAACCCT
Band lengths:
244-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development