MmuEX6094230 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84973863-84994781:+
Coord C1 exon
chr4:84973863-84974025
Coord A exon
chr4:84979324-84979521
Coord C2 exon
chr4:84994629-84994781
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCTCATTTTCAACAGCTT
3' ss Score
8.08
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
Seq A exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
Seq C2 exon
GCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATATTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCAGAGAAGGGGACTGAAGGAAAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'16-22,'16-19,19-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.444 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGCAGAACGTGTACAA
R:
TCGCCATCAACTTTTCGTTTGC
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types