MmuEX6094230 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84619767-84640685:+
Coord C1 exon
chr4:84619767-84619929
Coord A exon
chr4:84625228-84625425
Coord C2 exon
chr4:84640533-84640685
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCTCATTTTCAACAGCTT
3' ss Score
8.08
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
Seq A exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
Seq C2 exon
GCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATATTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCAGAGAAGGGGACTGAAGGAAAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'7-10,'7-7,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.433 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGCAGAACGTGTACAA
R:
TCGCCATCAACTTTTCGTTTGC
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: