HsaEX0016088 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17298188-17330806:+
Coord C1 exon
chr9:17298188-17298350
Coord A exon
chr9:17309056-17309250
Coord C2 exon
chr9:17330630-17330806
Length
195 bp
Sequences
Splice sites
3' ss Seq
GGATATATTTTTTGAAACAGCTT
3' ss Score
4.55
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAA
Seq A exon
CTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAATGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCTAAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACTACTCAGCACAG
Seq C2 exon
GTACCTCATCGCCCATCCTTATCAAGCTTAGAAACGTTAATGGTTTCACAGAAGTCTGAAATTGAGTATTTACAGGAGAAACTAAAGATAGCAAATGAAAAACTGTCAGAAAACATATCTGCCAACAAGGGTTTCTCCCGAAAGAGCATCATGACAAGTGCTGAAGGAAAACATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.172 A=0.678 C2=0.587
Domain overlap (PFAM):
C1:
PF048997=MbeD_MobD=PU(15.7=14.5)
A:
PF048997=MbeD_MobD=PD(80.4=63.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACAGCCCAGCAAGCAGAG
R:
GGAGAAACCCTTGTTGGCAGA
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)