DreEX6031821 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26260174-26298547:-
Coord C1 exon
chr1:26298385-26298547
Coord A exon
chr1:26298076-26298240
Coord C2 exon
chr1:26260174-26260263
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTCTGCTGTGACAGCTC
3' ss Score
6.53
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGTGAGCTCCAGGACCTGCAGTGTCTGTACAAGCAGAGCGTAGAACATGCAGGAGAACAGGCCCATCTTATTCAGCAGCTGGAGGGTCTTAACCTGGACACGCAAAGAGTCCTGCGCAGCCAGGAGGAGGCCCACACAGCGGACACCGTCTCTTACCAGAAG
Seq A exon
CTCTACAGCGAGCTGAGCGTGTCATACCAGGCCCTTTGGCACAGCCAGGAACAGCTCCACCAGCGGGAAGCAGCCCTCAGCATGCAGCTCAGCCAGAGAGATCAGCAGATCCAAGAACTCCAGGCACAGCTGCAGAGTTTCACAGCAGCCGCGGGGCACTGTGAG
Seq C2 exon
GACTCTGGGTCTCCAGGTGGCAGCAGCAGTGACGGAGCTGACAGTCTGGAGAAAAGGATTCAGCAACTGCAGGAATTACTCGCTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'11-11,'11-9,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.236 C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTCCAGGACCTGCAG
R:
GCGAGTAATTCCTGCAGTTGC
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]