BtaEX0009532 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40565576-40566786:+
Coord C1 exon
chr3:40565576-40565629
Coord A exon
chr3:40566201-40566207
Coord C2 exon
chr3:40566742-40566786
Length
7 bp
Sequences
Splice sites
3' ss Seq
TCTTGAAACTACTTACTCAGAAC
3' ss Score
2.23
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
GGTCCACAAGGAAAACCAGGGCTTGCAGGACTTCCTGGTGCTGATGGGCCTCCT
Seq A exon
AACTAAG
Seq C2 exon
GGTCATCCTGGAAAAGAAGGCCAGTCTGGAGAAAAAGGTTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=1.000 C2=0.696
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.1=100),PF0139113=Collagen=PU(13.3=61.1)
A:
PF0139113=Collagen=PD(0.1=0.0)
C2:
PF0139113=Collagen=FE(15.7=100),PF0139113=Collagen=FE(16.9=100)
Main Inclusion Isoform:
ENSBTAT00000028276fB1826
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACAAGGAAAACCAGGGCT
R:
AACCTTTTTCTCCAGACTGGCC
Band lengths:
92-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development