Special

ENSBTAG00000021217 @ bosTau6

Biotype
protein_coding
Gene Symbol
COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40448699-40682012:+
Assembly
bosTau6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
16
chr3:40583021-40583036
+
13.4
59.46
0
Exon Skipping
255
chr3:40532012-40532266
+
97.67
12.79
0
Exon Skipping
7
chr3:40566201-40566207
+
4.89
21.37
0
Exon Skipping
46
chr3:40541571-40541616
+
4.48
27.27
0
Exon Skipping
74
chr3:40565936-40566009
+
8.81
38.46
0
Intron Retention
1112
chr3:40565630-40566741
+
7.3
35.66
0
Intron Retention
129
chr3:40583258-40583386
+
9.59
100
0
Intron Retention
115
chr3:40583625-40583739
+
7.4
95.12
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000060718 COL11A1 1-to-1
Human hg19 ENSG00000060718 COL11A1 1-to-1
Mouse mm10 ENSMUSG00000027966 Col11a1 1-to-1
Mouse mm9 ENSMUSG00000027966 Col11a1 1-to-1
Rat rn6 ENSRNOG00000023148 Col11a1 1-to-1
Chicken galGal4 ENSGALG00000005180 COL11A1 1-to-1
Chicken galGal3 ENSGALG00000005180 COL11A1 1-to-1
Zebrafish danRer10 ENSDARG00000009014 col11a1b 1-to-2
Zebrafish danRer10 ENSDARG00000026165 col11a1a 1-to-2
Fruitfly dm6 FBgn0000299 Cg25C 16-to-2
Fruitfly dm6 FBgn0016075 vkg 16-to-2
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