BtaEX0009531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40529902-40533038:+
Coord C1 exon
chr3:40529902-40529991
Coord A exon
chr3:40532012-40532266
Coord C2 exon
chr3:40532976-40533038
Length
255 bp
Sequences
Splice sites
3' ss Seq
CTTACAACATAAATTAATAGCCA
3' ss Score
1
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCAAATATTGTTGATGATTTTCAAGAATACAACTATGGGACAGAAAGTTACCAGACGGAAGCTCCTAGGAGTGTATCTGGATCAAATGAG
Seq A exon
CCAAATCCAGTTGAAGAAGTATTTACTGAAGAATATCTAACTGGAGAGGATTATGATTCCCAGAGGAAAAATTCTGAGGATATGCTATATGAAAACAAACAAATAGACGGCAGGGACTCTGATCTTCTGGTAGATGGAGATTTAGGCGAATATGATTTTTATGAATATAAGGAATATGAAGATAAACCAACAAGTCCCACTAATGAAGAATTTGGTCCAGGTGTTCCAGCAGAAACAGATATCACAGAAACAAGT
Seq C2 exon
ATAAATGGCCATGGTGCATATGGAGAAAAAGGACAGAAAGGAGAACCAGCAGTAGTTGAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'9-11,'9-8,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=0.953 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(3.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development