GgaEX0007147 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10200549-10205674:+
Coord C1 exon
chr8:10200549-10200644
Coord A exon
chr8:10202897-10203142
Coord C2 exon
chr8:10205612-10205674
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTTGCTACTGATATGAATAGCAA
3' ss Score
1.58
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAAACATTGTTGATGAATTTCAAGAATATAGCGTAGCTGGAAATGACTATGGGCCCCGGACAGAAGCACCCTCCAGAACTACTGAAGCCAATGAG
Seq A exon
CAAAAACCTGTTGAAGAAGTATTTGCTGAAGAATACATAACTGGAGAGGATTATGATAAAAAAACTGAGGAAACTGAATATGGAAGCAGAGGAGTAGACCTCAGTGAATCTGATCTTCTGGTAGATGGAGATTTAGGCGAATATGATTTTTATGAATATAAAGAATATGAAGAGAAACCGACTGATTCTACTAATGAGGAGTTTGGTCCAGGTGTTCCTGCAGAGACTGATATCACAGAAACAAGC
Seq C2 exon
GTAACACAACATGGGGCTTATGGAGAAAAAGGACAAAAGGGAGAACCAGCTGTGATTGAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX3-6/26=5-7
Average complexity
S
Mappability confidence:
96%=100=96%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.959 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACATTGTTGATGAATTTCAAGA
R:
GGGTTCAATCACAGCTGGTTCT
Band lengths:
159-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]