DreEX0022818 @ danRer10
Exon Skipping
Gene
ENSDARG00000026165 | col11a1a
Description
collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
Coordinates
chr24:28768629-28773237:-
Coord C1 exon
chr24:28773139-28773237
Coord A exon
chr24:28769933-28770229
Coord C2 exon
chr24:28768629-28768691
Length
297 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTTGGGTGTAATAAGGCC
3' ss Score
2.63
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TCTAACAATGTAGATGGAGAGTACTATACAGACAGTGAACTTGACTACGGAACAGTAGATGCTTCCAAAACGCCTGTCGCAACCACTGGACCAAACAAG
Seq A exon
GCCATGGAAGAGGAGAATTTTGGTGATTATATCACCGAGACGGCCCAGGCTGGTCTGGATCCGACCGCTGCCTCAGAAGCTGTGCTGCCCAGTGGCACCGCTGACCCCATCGGAGTGGACTCGTATGACTTTAAGGAGTATGATCTTAAGGAATATGATGTGACTGGGCTTGACAAAAATCAGTATGAGTATGGGCCTTATGATGAGTTTGGCAATGTGGCTCCAAACCCAACATCCAATTACGAGGACACTTTTGGGCCTGGGGTTGCGGCCGAAACCGACATCGCTGAAACAGAC
Seq C2 exon
CTGGGTGGAGGTGCTGCTCTTGGTCAGAAAGGTGAGAAAGGAGAGCCTGCAGTGATTGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026165_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=0.889 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTACTATACAGACAGTGA
R:
TGGTTCAATCACTGCAGGCTC
Band lengths:
148-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]